RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA195897", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA195897 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27154526 27154526 PRJNA195897_P_NODE_442_length_803_cov_2.205570_g415_i0 PRJNA195897 442 803 2.20557 17.7107271 Myxococcota 2818505 Bacteria Bacteria 139 2.2499999999999998e-34   NR PKN55183.1 2013741 g415 i0 45.1 1.97633872976339 175 87 62 3 661 164 258 432 PKN55183.1 MAG: hypothetical protein CVU56_22585 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14] diamond 1587 139 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14
31274610 31274610 PRJNA195897_P_NODE_6595_length_192_cov_2.181818_g6562_i0 PRJNA195897 6595 192 2.181818 4.18909056 Deltaproteobacteria bacterium RIFOXYB12_FULL_58_9 1797899 Bacteria Bacteria 79.3 2.34e-15   NR OGR09953.1 1797899 g6562 i0 54 1.953125 63 29 98.4 0 191 3 256 318 OGR09953.1 MAG: peptidyl-dipeptidase [Deltaproteobacteria bacterium RIFOXYB12_FULL_58_9] diamond 375 79.3 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYB12_FULL_58_9
32494785 32494785 PRJNA195897_P_NODE_11639_length_164_cov_0.904348_g11606_i0 PRJNA195897 11639 164 0.904348 1.48313072 Bacteria 2 Bacteria Bacteria 82 1.78e-16   NR PKN47006.1 2013744 g11606 i0 64.8 9.87804878048781 54 19 98.8 0 162 1 409 462 PKN47006.1 MAG: 1-pyrroline-5-carboxylate dehydrogenase [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-17] diamond 1620 82 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-17

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;