RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA195897", tax_clade = "Sar" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA195897 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27516299 27516299 PRJNA195897_P_NODE_10823_length_165_cov_1.344828_g10790_i0 PRJNA195897 10823 165 1.344828 2.2189662 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 80.5 6.28e-16   NR ETO05095.1 46433 g10790 i0 74.1 1.96363636363636 54 14 98.2 0 163 2 235 288 ETO05095.1 hypothetical protein RFI_32303 [Reticulomyxa filosa] diamond 324 80.5 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
29316030 29316030 PRJNA195897_P_NODE_4269_length_232_cov_0.786885_g4236_i0 PRJNA195897 4269 232 0.786885 1.8255732 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 59.7 4.54e-9   NR ETO18974.1 46433 g4236 i0 54.7 0.685344827586207 53 24 68.5 0 161 3 2 54 ETO18974.1 delta adaptin [Reticulomyxa filosa] diamond 159 59.7 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
29537023 29537023 PRJNA195897_P_NODE_10110_length_167_cov_0.881356_g10077_i0 PRJNA195897 10110 167 0.881356 1.47186452 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 44.3 0.00378   NR ETO04605.1 46433 g10077 i0 55.6 2.06586826347305 36 16 64.7 0 42 149 4 39 ETO04605.1 hypothetical protein RFI_32791 [Reticulomyxa filosa] diamond 345 44.3 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;