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contig_metadata

7 rows where bioproject = "PRJNA195897", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 7 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 7 ✖

bioproject 1

  • PRJNA195897 · 7 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8019377 8019377 PRJNA195897_P_NODE_6287_length_196_cov_1.306122_g6254_i0 PRJNA195897 6287 196 1.306122 2.55999912 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 69.3 8.15e-12   NR MEP6591595.1 2026742 g6254 i0 74.5 2.3265306122449 51 13 78.1 0 154 2 1 51 MEP6591595.1 serine hydroxymethyltransferase [Gemmatimonadota bacterium] diamond 456 69.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
24592224 24592224 PRJNA195897_P_NODE_4200_length_233_cov_1.603261_g4167_i0 PRJNA195897 4200 233 1.603261 3.73559813 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 84.7 2.06e-17   NR HET7585084.1 2026741 g4167 i0 60.3 2.84549356223176 73 28 94 1 225 7 196 267 HET7585084.1 NADPH:quinone reductase [Gemmatimonadaceae bacterium] diamond 663 84.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
26711619 26711619 PRJNA195897_P_NODE_6201_length_197_cov_1.405405_g6168_i0 PRJNA195897 6201 197 1.405405 2.76864785 Pseudomonadati 3379134 Bacteria Bacteria 53.5 2.72e-6   NR MCY4400656.1 2026742 g6168 i0 46.8 1.88832487309645 62 23 94.4 1 187 2 149 200 MCY4400656.1 DUF1295 domain-containing protein [Gemmatimonadota bacterium] diamond 372 53.9 0.992578849721707 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28432021 28432021 PRJNA195897_P_NODE_2946_length_287_cov_1.508403_g2913_i0 PRJNA195897 2946 287 1.508403 4.32911661 Gemmatimonas sp. 1962908 Bacteria Bacteria 51.2 6.37e-5   NR MQA91432.1 1962908 g2913 i0 41.1 0.763066202090592 73 43 76.3 0 52 270 235 307 MQA91432.1 hypothetical protein [Gemmatimonas sp.] diamond 219 51.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp.
29239191 29239191 PRJNA195897_P_NODE_3889_length_244_cov_1.353846_g3856_i0 PRJNA195897 3889 244 1.353846 3.30338424 Bacteria 2 Bacteria Bacteria 138 1.13e-37   NR MEN8144413.1 2026742 g3856 i0 77.5 8.86475409836066 80 18 98.4 0 241 2 62 141 MEN8144413.1 amidohydrolase family protein [Gemmatimonadota bacterium] diamond 2163 138 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29252640 29252640 PRJNA195897_P_NODE_9089_length_169_cov_0.866667_g9056_i0 PRJNA195897 9089 169 0.866667 1.46466723 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 40.8 0.0386   NR MFL5383213.1 3047548 g9056 i0 38 0.887573964497041 50 22 72.8 2 169 47 48 97 MFL5383213.1 DoxX family protein [Longimicrobiaceae bacterium] diamond 150 40.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium
30691979 30691979 PRJNA195897_P_NODE_553_length_722_cov_1.341753_g523_i0 PRJNA195897 553 722 1.341753 9.68745666 Bacteria 2 Bacteria Bacteria 213 2.08e-65   NR RMH68725.1 2026742 g523 i0 52.8 14.1523545706371 214 95 88.9 3 720 79 27 234 RMH68725.1 MAG: SDR family oxidoreductase [Gemmatimonadota bacterium] diamond 10218 213 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;