contig_metadata
12 rows where bioproject = "PRJNA193544", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 365871 | 365871 | PRJNA193544_S_NODE_1761_length_201_cov_377.488372_g1746_i0 | PRJNA193544 | 1761 | 201 | 377.488372 | 758.75162772 | Spirochaeta aurantia | 147 | Bacteria | Bacteria | 235 | 1.62e-57 | NTclustered | gi|47779237|gb|AY599019.1| | 555314 | g1746 | i0 | 95.27 | 205.233830845771 | 148 | 7 | 74 | 0 | 52 | 199 | 3508 | 3361 | Spirochaeta aurantia strain M1 16S ribosomal RNA, tRNA-Ile, 23S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence | blastn | 41252 | 235 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Spirochaetaceae | Spirochaeta | Spirochaeta aurantia | ||
| 365875 | 365875 | PRJNA193544_S_NODE_201_length_398_cov_12.878049_g186_i0 | PRJNA193544 | 201 | 398 | 12.878049 | 51.25463502 | Spirochaeta aurantia | 147 | Bacteria | Bacteria | 468 | 3.19e-127 | NTclustered | gi|47779237|gb|AY599019.1| | 555314 | g186 | i0 | 90.909 | 265.168341708543 | 352 | 26 | 88 | 6 | 49 | 398 | 2555 | 2208 | Spirochaeta aurantia strain M1 16S ribosomal RNA, tRNA-Ile, 23S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence | blastn | 105537 | 468 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Spirochaetaceae | Spirochaeta | Spirochaeta aurantia | ||
| 1640688 | 1640688 | PRJNA193544_S_NODE_362_length_344_cov_72.368254_g347_i0 | PRJNA193544 | 362 | 344 | 72.368254 | 248.94679376 | Spirochaeta aurantia | 147 | Bacteria | Bacteria | 586 | 7.209999999999997e-163 | NTclustered | gi|47779237|gb|AY599019.1| | 555314 | g347 | i0 | 97.384 | 307.537790697674 | 344 | 9 | 100 | 0 | 1 | 344 | 2466 | 2809 | Spirochaeta aurantia strain M1 16S ribosomal RNA, tRNA-Ile, 23S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence | blastn | 105793 | 586 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Spirochaetaceae | Spirochaeta | Spirochaeta aurantia | ||
| 4192990 | 4192990 | PRJNA193544_S_NODE_2804_length_165_cov_2.867647_g2789_i0 | PRJNA193544 | 2804 | 165 | 2.867647 | 4.73161755 | Spirochaetia bacterium | 2053615 | Bacteria | Bacteria | 56.5 | 0.001 | NTclustered | gi|2891483193|emb|OZ220223.1| | 2053615 | g2789 | i0 | 90.698 | 0.521212121212121 | 43 | 3 | 26 | 1 | 87 | 129 | 1056688 | 1056647 | MAG: Spirochaetia bacterium isolate 03e4f5d5-dacf-4468-93a7-e7b19fb300a1 genome assembly, chromosome: 2 | blastn | 86 | 56.5 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetia bacterium | |||||
| 5469229 | 5469229 | PRJNA193544_S_NODE_245_length_376_cov_16.605187_g230_i0 | PRJNA193544 | 245 | 376 | 16.605187 | 62.43550312 | Spirochaeta aurantia | 147 | Bacteria | Bacteria | 420 | 8.519999999999998e-113 | NTclustered | gi|47779237|gb|AY599019.1| | 555314 | g230 | i0 | 87.634 | 130.369680851064 | 372 | 32 | 98 | 12 | 1 | 368 | 3985 | 3624 | Spirochaeta aurantia strain M1 16S ribosomal RNA, tRNA-Ile, 23S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence | blastn | 49019 | 420 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Spirochaetaceae | Spirochaeta | Spirochaeta aurantia | ||
| 9293984 | 9293984 | PRJNA193544_S_NODE_2668_length_169_cov_10.135714_g2653_i0 | PRJNA193544 | 2668 | 169 | 10.135714 | 17.12935666 | Leptospira cinconiae | 3235173 | Bacteria | Bacteria | 84.2 | 5e-12 | NTclustered | gi|2777192084|gb|CP162137.1| | 3235173 | g2653 | i0 | 76.163 | 2.30177514792899 | 172 | 34 | 100 | 6 | 1 | 169 | 754099 | 754266 | Leptospira cinconiae strain WS58.C1 chromosome 1, complete sequence | blastn | 389 | 84.2 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Leptospirales | Leptospiraceae | Leptospira | Leptospira cinconiae | ||
| 13808652 | 13808652 | PRJNA193544_S_NODE_2171_length_184_cov_23672.445161_g2156_i0 | PRJNA193544 | 2171 | 184 | 23672.445161 | 43557.29909624 | Bacteria | 2 | Bacteria | Bacteria | 139 | 1.17e-28 | NTclustered | gi|2621703426|emb|OY760686.1| | 2202144 | g2156 | i0 | 83.019 | 449.695652173913 | 159 | 22 | 84 | 5 | 30 | 184 | 2084 | 2241 | MAG: Spirochaetota bacterium isolate b615e79e-4617-45ea-95f9-f7a736470f88 genome assembly, chromosome: 1 | blastn | 82744 | 139 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetota bacterium | ||||||
| 14394971 | 14394971 | PRJNA193544_S_NODE_2072_length_188_cov_24367.622642_g2057_i0 | PRJNA193544 | 2072 | 188 | 24367.622642 | 45811.13056696 | Spirochaeta aurantia | 147 | Bacteria | Bacteria | 217 | 5.4e-52 | NTclustered | gi|47779237|gb|AY599019.1| | 555314 | g2057 | i0 | 94.928 | 291.446808510638 | 138 | 7 | 73 | 0 | 31 | 168 | 3194 | 3057 | Spirochaeta aurantia strain M1 16S ribosomal RNA, tRNA-Ile, 23S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence | blastn | 54792 | 217 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Spirochaetaceae | Spirochaeta | Spirochaeta aurantia | ||
| 18906705 | 18906705 | PRJNA193544_S_NODE_775_length_276_cov_2535.566802_g760_i0 | PRJNA193544 | 775 | 276 | 2535.566802 | 6998.16437352 | Turneriella | 338321 | Bacteria | Bacteria | 366 | 7.98e-97 | NTclustered | gi|470489162|ref|NR_076910.1| | 29510 | g760 | i0 | 94.894 | 3.66666666666667 | 235 | 11 | 85 | 1 | 1 | 234 | 255 | 489 | Turneriella parva strain DSM 21527 23S ribosomal RNA gene, complete sequence | blastn | 1012 | 368 | 0.994565217391304 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Leptospirales | Leptospiraceae | Turneriella | Turneriella parva | ||
| 19491862 | 19491862 | PRJNA193544_S_NODE_1456_length_215_cov_19805.129032_g1441_i0 | PRJNA193544 | 1456 | 215 | 19805.129032 | 42581.0274188 | Spirochaeta aurantia | 147 | Bacteria | Bacteria | 342 | 9.999999999999999e-90 | NTclustered | gi|47779237|gb|AY599019.1| | 555314 | g1441 | i0 | 100 | 124.074418604651 | 185 | 0 | 86 | 0 | 31 | 215 | 2964 | 2780 | Spirochaeta aurantia strain M1 16S ribosomal RNA, tRNA-Ile, 23S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence | blastn | 26676 | 342 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Spirochaetaceae | Spirochaeta | Spirochaeta aurantia | ||
| 19491908 | 19491908 | PRJNA193544_S_NODE_736_length_281_cov_15513.293651_g721_i0 | PRJNA193544 | 736 | 281 | 15513.293651 | 43592.35515931 | Turneriella parva | 29510 | Bacteria | Bacteria | 169 | 2.4699999999999997e-37 | NTclustered | gi|390609540|gb|CP002959.1| | 869212 | g721 | i0 | 100 | 30.3807829181495 | 91 | 0 | 33 | 0 | 158 | 248 | 2844746 | 2844836 | Turneriella parva DSM 21527, complete genome | blastn | 8537 | 169 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Leptospirales | Leptospiraceae | Turneriella | Turneriella parva | ||
| 20767446 | 20767446 | PRJNA193544_S_NODE_817_length_270_cov_16311.385892_g802_i0 | PRJNA193544 | 817 | 270 | 16311.385892 | 44040.7419084 | Spirochaeta aurantia | 147 | Bacteria | Bacteria | 333 | 7.8899999999999995e-87 | NTclustered | gi|47779237|gb|AY599019.1| | 555314 | g802 | i0 | 91.983 | 133.592592592593 | 237 | 19 | 88 | 0 | 34 | 270 | 4741 | 4505 | Spirochaeta aurantia strain M1 16S ribosomal RNA, tRNA-Ile, 23S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence | blastn | 36070 | 333 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Spirochaetaceae | Spirochaeta | Spirochaeta aurantia |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;