RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA193544", tax_kingdom = "Fungi" and tax_phylum = "Microsporidia"

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tax_superkingdom 1

tax_phylum 1

  • Microsporidia · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA193544 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6743565 6743565 PRJNA193544_S_NODE_2406_length_177_cov_18.432432_g2391_i0 PRJNA193544 2406 177 18.432432 32.62540464 Vittaforma corneae 42399 Fungi Fungi 54.7 0.004   NTclustered gi|667639983|ref|XR_552275.1| 993615 g2391 i0 100 0.480225988700565 29 0 16 0 1 29 1880 1852 Vittaforma corneae ATCC 50505 28S ribosomal RNA (VICG_02297), rRNA blastn 85 54.7 1 Eukaryota Opisthokonta Fungi Microsporidia     Nosematidae Vittaforma Vittaforma corneae
13119662 13119662 PRJNA193544_S_NODE_191_length_407_cov_9485.907407_g176_i0 PRJNA193544 191 407 9485.907407 38607.64314649 Heterosporis sp. NBDP-2013a 1289055 Fungi Fungi 100 1.38e-16   NTclustered gi|448278458|gb|KC137554.1| 1289055 g176 i0 83.036 0.275184275184275 112 18 28 1 110 221 2962 2852 Heterosporis sp. NBDP-2013a isolate MN/CISCO small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 112 100 1 Eukaryota Opisthokonta Fungi Microsporidia     Pleistophoridae Heterosporis Heterosporis sp. NBDP-2013a
20767407 20767407 PRJNA193544_S_NODE_177_length_413_cov_9187.291667_g162_i0 PRJNA193544 177 413 9187.291667 37943.51458471 Heterosporis sp. NBDP-2013a 1289055 Fungi Fungi 100 1.4e-16   NTclustered gi|448278458|gb|KC137554.1| 1289055 g162 i0 83.036 0.271186440677966 112 18 27 1 187 298 2852 2962 Heterosporis sp. NBDP-2013a isolate MN/CISCO small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 112 100 1 Eukaryota Opisthokonta Fungi Microsporidia     Pleistophoridae Heterosporis Heterosporis sp. NBDP-2013a

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;