RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA193544", tax_kingdom = "Fungi" and tax_phylum = "Cryptomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Cryptomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA193544 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5469204 5469204 PRJNA193544_S_NODE_1505_length_213_cov_35.489130_g1490_i0 PRJNA193544 1505 213 35.48913 75.5918469 Rozella sp. 1932610 Fungi Fungi 148 2.32e-31   NTclustered gi|2468791023|gb|OQ702923.1| 1932610 g1490 i0 87.121 47.7230046948357 132 15 62 2 1 131 4334 4204 Rozella sp. isolate PSC249 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 10165 148 1 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella sp.
22042534 22042534 PRJNA193544_S_NODE_3138_length_157_cov_16.812500_g3123_i0 PRJNA193544 3138 157 16.8125 26.395625 Rozella sp. JEL347 276837 Fungi Fungi 128 2.09e-25   NTclustered gi|82398068|gb|DQ273766.1| 276837 g3123 i0 89.216 9.48407643312102 102 11 65 0 30 131 2971 3072 Rozella sp. JEL347 isolate AFTOL-ID 16 28S ribosomal RNA gene, partial sequence blastn 1489 128 1 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella sp. JEL347
28400391 28400391 PRJNA193544_S_NODE_2126_length_186_cov_570.751592_g2111_i0 PRJNA193544 2126 186 570.751592 1061.59796112 Rozella allomycis CSF55 988480 Fungi Fungi 48.1 1.14e-5   NR RKP19416.1 988480 g2111 i0 66.7 0.532258064516129 33 11 53.2 0 68 166 8 40 RKP19416.1 hypothetical protein ROZALSC1DRAFT_14013, partial [Rozella allomycis CSF55] diamond 99 48.1 1 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella allomycis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;