RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA193544", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 4 ✖

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA193544 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5469257 5469257 PRJNA193544_S_NODE_945_length_256_cov_19.903084_g930_i0 PRJNA193544 945 256 19.903084 50.95189504 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 263 9.88e-66   NTclustered gi|2874253701|emb|OY969427.1| 157466 g930 i0 86.555 306.9296875 238 32 93 0 9 246 3407427 3407190 MAG: uncultured Armatimonadetes bacterium isolate MFD09671.bin.1.19 genome assembly, chromosome: 1 blastn 78574 263 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
13119668 13119668 PRJNA193544_S_NODE_2051_length_189_cov_694.118750_g2036_i0 PRJNA193544 2051 189 694.11875 1311.8844375 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 124 3.3899999999999996e-24   NTclustered gi|2874254000|emb|OY970325.1| 157466 g2036 i0 80.982 114.063492063492 163 26 85 5 1 160 1304215 1304055 MAG: uncultured Armatimonadetes bacterium isolate MFD05942.bin.1.84 genome assembly, chromosome: 1 blastn 21558 124 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
19491894 19491894 PRJNA193544_S_NODE_2836_length_164_cov_16.407407_g2821_i0 PRJNA193544 2836 164 16.407407 26.90814748 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 178 2.17e-40   NTclustered gi|2874254000|emb|OY970325.1| 157466 g2821 i0 91.473 97.109756097561 129 11 79 0 3 131 1307041 1306913 MAG: uncultured Armatimonadetes bacterium isolate MFD05942.bin.1.84 genome assembly, chromosome: 1 blastn 15926 178 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
20767391 20767391 PRJNA193544_S_NODE_117_length_449_cov_9271.445238_g104_i0 PRJNA193544 117 449 9271.445238 41628.78911862 Capsulimonas corticalis 2219043 Bacteria Bacteria 399 1.3499999999999999e-106   NTclustered gi|2240447379|dbj|AP025739.1| 2219043 g104 i0 84.653 466.942093541203 404 58 89 4 34 433 594534 594937 Capsulimonas corticalis AX-7 DNA, complete genome blastn 209657 399 1 Bacteria   Bacillati Armatimonadota Armatimonadia Capsulimonadales Capsulimonadaceae Capsulimonas Capsulimonas corticalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;