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contig_metadata

18 rows where bioproject = "PRJNA193544", tax_clade = "Sar" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 18 ✖

tax_clade 1

  • Sar · 18 ✖

bioproject 1

  • PRJNA193544 · 18 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1640689 1640689 PRJNA193544_S_NODE_382_length_339_cov_12047.280645_g367_i0 PRJNA193544 382 339 12047.280645 40840.28138655 Pythium sp. 'thermoculicivorax' 3118392 SAR_Eukaryotes SAR_Eukaryotes 375 1.6699999999999995e-99   NTclustered gi|2666789015|gb|PP262616.1| 3118392 g367 i0 88.925 90.929203539823 307 30 90 2 1 306 1169 1472 Pythium sp. 'thermoculicivorax' isolate LCMP-P1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 30825 375 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium sp. 'thermoculicivorax'
1640705 1640705 PRJNA193544_S_NODE_982_length_252_cov_2814.959641_g967_i0 PRJNA193544 982 252 2814.959641 7093.69829532 Saprolegnia australis 281402 SAR_Eukaryotes SAR_Eukaryotes 374 4.2899999999999985e-99   NTclustered gi|299764602|gb|GQ919079.1| 281402 g967 i0 100 77.8134920634921 202 0 80 0 51 252 366 165 Saprolegnia australis 28S large subunit ribosomal RNA gene, partial sequence blastn 19609 374 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia australis
2916579 2916579 PRJNA193544_S_NODE_643_length_294_cov_13491.894340_g628_i0 PRJNA193544 643 294 13491.89434 39666.1693596 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 399 8.459999999999999e-107   NTclustered gi|325194423|emb|FR825253.1| 890382 g628 i0 94.253 90.0918367346939 261 15 89 0 1 261 396 656 Albugo laibachii Nc14, genomic contig CONTIG_1950_NC14_v4_1284_22758 blastn 26487 399 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
2916581 2916581 PRJNA193544_S_NODE_703_length_285_cov_2459.085938_g688_i0 PRJNA193544 703 285 2459.085938 7008.3949233 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 302 2.37e-77   NTclustered gi|2661487612|ref|XR_009934924.1| 403677 g688 i0 89.831 82.9017543859649 236 22 82 2 1 235 2269 2503 Phytophthora infestans T30-4 28S ribosomal RNA (PITG_33530), partial rRNA blastn 23627 302 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
4883211 4883211 PRJNA193544_S_NODE_2124_length_186_cov_23635.261146_g2109_i0 PRJNA193544 2124 186 23635.261146 43961.58573156 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 261 2.43e-65   NTclustered gi|2440150|emb|X75631.1| 4788 g2109 i0 97.386 81.0376344086021 153 4 82 0 1 153 3280 3432 P.megasperma gene for 28S ribosomal RNA blastn 15073 261 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megasperma
5469224 5469224 PRJNA193544_S_NODE_2105_length_187_cov_22506.227848_g2090_i0 PRJNA193544 2105 187 22506.227848 42086.64607576 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 279 6.74e-71   NTclustered gi|813199071|ref|XR_001099870.1| 695850 g2090 i0 99.351 17.2299465240642 154 1 82 0 34 187 673 520 Saprolegnia parasitica CBS 223.65 28S ribosomal RNA rRNA blastn 3222 279 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
5469248 5469248 PRJNA193544_S_NODE_685_length_289_cov_9.023077_g670_i0 PRJNA193544 685 289 9.023077 26.07669253 Saprolegnia delica 944641 SAR_Eukaryotes SAR_Eukaryotes 508 1.32e-139   NTclustered gi|1121985516|gb|KX555490.1| 944641 g670 i0 99.64 94.6678200692042 278 1 96 0 12 289 680 403 Saprolegnia delica strain SAP0202 28S ribosomal RNA gene, partial sequence blastn 27359 508 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia delica
10569939 10569939 PRJNA193544_S_NODE_1029_length_248_cov_257.625571_g1014_i0 PRJNA193544 1029 248 257.625571 638.91141608 Leptolegnia sp. CBS 177.86 170620 SAR_Eukaryotes SAR_Eukaryotes 86.1 2.21e-12   NTclustered gi|17224985|gb|AF320588.1| 170620 g1014 i0 94.545 22.4717741935484 55 3 22 0 1 55 221 275 Leptolegnia sp. CBS177.86 28S ribosomal RNA gene, partial sequence blastn 5573 86.1 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Leptolegnia Leptolegnia sp. CBS 177.86
10569942 10569942 PRJNA193544_S_NODE_1189_length_234_cov_17153.292683_g1174_i0 PRJNA193544 1189 234 17153.292683 40138.70487822 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 272 1.4799999999999999e-68   NTclustered gi|813199067|ref|XR_001099866.1| 695850 g1174 i0 91.457 34.0213675213675 199 15 85 2 5 202 1546 1743 Saprolegnia parasitica CBS 223.65 28S ribosomal RNA rRNA blastn 7961 272 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
10569971 10569971 PRJNA193544_S_NODE_2869_length_163_cov_32.082090_g2854_i0 PRJNA193544 2869 163 32.08209 52.2938067 uncultured Lagenidiales 282496 SAR_Eukaryotes SAR_Eukaryotes 296 5.68e-76   NTclustered gi|1516250893|gb|MK177609.1| 858389 g2854 i0 99.387 100.128834355828 163 1 100 0 1 163 696 534 Uncultured Lagenidiales clone DDI66.fa small subunit ribosomal RNA gene, partial sequence blastn 16321 296 1 Eukaryota Sar   Oomycota   Lagenidiales     uncultured Lagenidiales
11844428 11844428 PRJNA193544_S_NODE_1190_length_234_cov_17153.082927_g1175_i0 PRJNA193544 1190 234 17153.082927 40138.21404918 Pythium sp. AP 378252 SAR_Eukaryotes SAR_Eukaryotes 252 1.93e-62   NTclustered gi|90855438|dbj|AB254193.1| 378252 g1175 i0 89.95 34.1752136752137 199 15 84 5 33 228 279 83 Pythium sp. AP genes for 28S rRNA, IGS, 5S rRNA, partial and complete sequence, strain: AP-1, AP-2 and AP-3 blastn 7997 252 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium sp. AP
12533864 12533864 PRJNA193544_S_NODE_1250_length_228_cov_18476.884422_g1235_i0 PRJNA193544 1250 228 18476.884422 42127.29648216 Saprolegnia 4769 SAR_Eukaryotes SAR_Eukaryotes 359 1.07e-94   NTclustered gi|13309829|gb|AF235953.1|AF235953 4770 g1235 i0 100 85.0964912280702 194 0 85 0 2 195 715 908 Saprolegnia ferax 28S large subunit ribosomal RNA gene, partial sequence blastn 19402 359 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia ferax
13119642 13119642 PRJNA193544_S_NODE_1191_length_234_cov_17152.790244_g1176_i0 PRJNA193544 1191 234 17152.790244 40137.52917096 Pythium sp. AP 378252 SAR_Eukaryotes SAR_Eukaryotes 274 4.11e-69   NTclustered gi|90855438|dbj|AB254193.1| 378252 g1176 i0 91.919 33.6623931623932 198 13 84 3 33 228 279 83 Pythium sp. AP genes for 28S rRNA, IGS, 5S rRNA, partial and complete sequence, strain: AP-1, AP-2 and AP-3 blastn 7877 274 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium sp. AP
18217580 18217580 PRJNA193544_S_NODE_1895_length_195_cov_24111.066265_g1880_i0 PRJNA193544 1895 195 24111.066265 47016.57921675 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 243 9.32e-60   NTclustered gi|325194632|emb|FR825445.1| 890382 g1880 i0 93.293 71.7846153846154 164 11 84 0 1 164 397 560 Albugo laibachii Nc14, genomic contig CONTIG_2284_NC14_v4_911_15847 blastn 13998 243 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
20181280 20181280 PRJNA193544_S_NODE_1396_length_219_cov_10.642105_g1381_i0 PRJNA193544 1396 219 10.642105 23.30620995 Pythium 4797 SAR_Eukaryotes SAR_Eukaryotes 398 2.1599999999999995e-106   NTclustered gi|338798221|gb|HQ665282.1| 156628 g1381 i0 100 97.7305936073059 215 0 98 0 1 215 34 248 Pythium diclinum isolate CBS 664.79 28S large subunit ribosomal RNA gene, partial sequence blastn 21403 398 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium diclinum
20181308 20181308 PRJNA193544_S_NODE_796_length_273_cov_53.237705_g781_i0 PRJNA193544 796 273 53.237705 145.33893465 Saprolegniaceae 4764 SAR_Eukaryotes SAR_Eukaryotes 457 4.549999999999999e-124   NTclustered gi|13309829|gb|AF235953.1|AF235953 4770 g781 i0 96.727 100.062271062271 275 7 100 1 1 273 340 66 Saprolegnia ferax 28S large subunit ribosomal RNA gene, partial sequence blastn 27317 460 0.993478260869565 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia ferax
22042519 22042519 PRJNA193544_S_NODE_2058_length_189_cov_26.662500_g2043_i0 PRJNA193544 2058 189 26.6625 50.392125 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 333 5.169999999999999e-87   NTclustered gi|813199067|ref|XR_001099866.1| 695850 g2043 i0 98.925 98.1164021164021 186 2 98 0 1 186 28 213 Saprolegnia parasitica CBS 223.65 28S ribosomal RNA rRNA blastn 18544 333 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
24592121 24592121 PRJNA193544_S_NODE_1600_length_207_cov_22479.056180_g1585_i0 PRJNA193544 1600 207 22479.05618 46531.6462926 uncultured Lagenidiales 282496 SAR_Eukaryotes SAR_Eukaryotes 305 1.26e-78   NTclustered gi|1516250893|gb|MK177609.1| 858389 g1585 i0 98.276 84.536231884058 174 3 84 0 34 207 1378 1205 Uncultured Lagenidiales clone DDI66.fa small subunit ribosomal RNA gene, partial sequence blastn 17499 305 1 Eukaryota Sar   Oomycota   Lagenidiales     uncultured Lagenidiales

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;