RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA193544", tax_clade = "Opisthokonta" and tax_phylum = "Platyhelminthes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 4 ✖

bioproject 1

  • PRJNA193544 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1055257 1055257 PRJNA193544_S_NODE_2001_length_191_cov_24154.746914_g1986_i0 PRJNA193544 2001 191 24154.746914 46135.56660574 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 294 2.47e-75   NTclustered gi|736694|gb|L41136.1|SNSRG18SA 39377 g1986 i0 100 81.1832460732984 159 0 83 0 33 191 206 48 Stenostomum sp. 18S ribosomal RNA (18S rRNA) gene, partial blastn 15506 294 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum sp. (in: flatworms)
8019245 8019245 PRJNA193544_S_NODE_1467_length_215_cov_11.440860_g1452_i0 PRJNA193544 1467 215 11.44086 24.597849 Promesostoma cochleare 1311875 Platyhelminthes Platyhelminthes 243 1.05e-59   NTclustered gi|588313926|gb|KC869884.1| 1311875 g1452 i0 87.383 98.2046511627907 214 23 99 4 1 212 2517 2728 Promesostoma cochleare 28S ribosomal RNA gene, partial sequence blastn 21114 243 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Rhabdocoela Promesostomidae Promesostoma Promesostoma cochleare
28653009 28653009 PRJNA193544_S_NODE_467_length_323_cov_14.707483_g452_i0 PRJNA193544 467 323 14.707483 47.50517009 Schistocephalus solidus 70667 Platyhelminthes Platyhelminthes 63.2 8.69e-10   NR VDM04658.1 70667 g452 i0 59.6 0.947368421052632 52 18 48.3 1 134 289 76 124 VDM04658.1 unnamed protein product [Schistocephalus solidus] diamond 306 63.2 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Schistocephalus Schistocephalus solidus
30249951 30249951 PRJNA193544_S_NODE_2152_length_185_cov_15.910256_g2137_i0 PRJNA193544 2152 185 15.910256 29.4339736 Metazoa 33208 Platyhelminthes Platyhelminthes 40.4 0.041   NR KAA3673245.1 34504 g2137 i0 69 2.05945945945946 29 9 47 0 87 1 46 74 KAA3673245.1 uncharacterized protein DEA37_0011152 [Paragonimus westermani] diamond 381 40.8 0.990196078431373 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Troglotrematidae Paragonimus Paragonimus westermani

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;