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contig_metadata

19 rows where bioproject = "PRJNA193544" and tax_clade = "Embryophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 19 ✖

bioproject 1

  • PRJNA193544 · 19 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4193008 4193008 PRJNA193544_S_NODE_804_length_272_cov_14430.037037_g789_i0 PRJNA193544 804 272 14430.037037 39249.70074064 Arachis stenosperma 217475 Plants Plants 89.8 1.9e-13   NTclustered gi|2531356839|ref|XR_009076377.1| 217475 g789 i0 92.063 12.6470588235294 63 5 23 0 210 272 97 35 PREDICTED: Arachis stenosperma 28S ribosomal RNA (LOC130954646), rRNA blastn 3440 89.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Arachis Arachis stenosperma
4883196 4883196 PRJNA193544_S_NODE_1444_length_216_cov_34.609626_g1429_i0 PRJNA193544 1444 216 34.609626 74.75679216 Glycine 3846 Plants Plants 390 3.559999999999999e-104   NTclustered gi|2027446350|ref|XR_005890558.1| 3847 g1429 i0 99.533 99.0740740740741 214 1 99 0 3 216 1917 2130 PREDICTED: Glycine max 28S ribosomal RNA (LOC121174465), rRNA blastn 21400 390 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Glycine Glycine max
5469220 5469220 PRJNA193544_S_NODE_2025_length_190_cov_371.956522_g2010_i0 PRJNA193544 2025 190 371.956522 706.7173918 Glycine max 3847 Plants Plants 283 5.319999999999999e-72   NTclustered gi|1448291615|ref|XR_003264244.1| 3847 g2010 i0 98.16 86.3105263157895 163 2 85 1 1 162 1611 1773 PREDICTED: Glycine max 18S ribosomal RNA (LOC112999065), rRNA blastn 16399 283 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Glycine Glycine max
6743534 6743534 PRJNA193544_S_NODE_1086_length_244_cov_11.790698_g1071_i0 PRJNA193544 1086 244 11.790698 28.76930312 Juglans microcarpa x Juglans regia 2249226 Plants Plants 69.4 2.19e-7   NTclustered gi|2031631824|ref|XR_005936574.1| 2249226 g1071 i0 79.63 11.2827868852459 108 12 43 6 126 230 3287 3387 PREDICTED: Juglans microcarpa x Juglans regia 28S ribosomal RNA (LOC121245168), rRNA blastn 2753 69.4 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Juglandaceae Juglans Juglans microcarpa x Juglans regia
7433119 7433119 PRJNA193544_S_NODE_166_length_417_cov_15.445876_g151_i0 PRJNA193544 166 417 15.445876 64.40930292 Glycine 3846 Plants Plants 579 1.4899999999999995e-160   NTclustered gi|1448291768|ref|XR_003264397.1| 3847 g151 i0 93.573 93.2470023980815 389 23 93 2 16 403 261 648 PREDICTED: Glycine max 28S ribosomal RNA (LOC112999219), rRNA blastn 38884 579 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Glycine Glycine max
8019241 8019241 PRJNA193544_S_NODE_1347_length_222_cov_9.419689_g1332_i0 PRJNA193544 1347 222 9.419689 20.91170958 Malania oleifera 397392 Plants Plants 113 8.910000000000001e-21   NTclustered gi|2532207879|ref|XR_009138347.1| 397392 g1332 i0 84.483 19.3738738738739 116 16 52 2 35 149 419 305 PREDICTED: Malania oleifera 28S ribosomal RNA (LOC131161192), rRNA blastn 4301 113 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Santalales Ximeniaceae Malania Malania oleifera
8019270 8019270 PRJNA193544_S_NODE_2667_length_169_cov_14.485714_g2652_i0 PRJNA193544 2667 169 14.485714 24.48085666 Pinus pinea 3346 Plants Plants 279 5.95e-71   NTclustered gi|1150534|emb|X87936.1| 3346 g2652 i0 98.137 95.5562130177515 161 2 95 1 4 164 2662 2821 P.pinea internal transcribed spacers 1 & 2 of ribosomal DNA blastn 16149 279 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Pinus Pinus pinea
9293975 9293975 PRJNA193544_S_NODE_2048_length_189_cov_21930.575000_g2033_i0 PRJNA193544 2048 189 21930.575 41448.78675 Dendromyza ledermannii 450010 Plants Plants 134 5.630000000000001e-27   NTclustered gi|1570104161|gb|MH390567.1| 450010 g2033 i0 91.667 43.8518518518519 96 8 51 0 61 156 3013 3108 Dendromyza ledermannii voucher D. Nickrent 4466 26S ribosomal RNA gene, partial sequence blastn 8288 134 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Santalales Amphorogynaceae Dendromyza Dendromyza ledermannii
9983294 9983294 PRJNA193544_S_NODE_3328_length_153_cov_41.758065_g3313_i0 PRJNA193544 3328 153 41.758065 63.88983945 Magnoliopsida 3398 Plants Plants 272 8.84e-69   NTclustered gi|2645384110|ref|XR_009840671.1| 3691 g3313 i0 98.693 1376.76470588235 153 2 100 0 1 153 2770 2618 PREDICTED: Populus nigra 28S ribosomal RNA (LOC133687332), rRNA blastn 210645 272 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malpighiales Salicaceae Populus Populus nigra
14394986 14394986 PRJNA193544_S_NODE_2832_length_164_cov_31.718519_g2817_i0 PRJNA193544 2832 164 31.718519 52.01837116 Brassica napus 3708 Plants Plants 52.8 0.014   NTclustered gi|2258135794|ref|XR_007334357.1| 3708 g2817 i0 96.875 0.195121951219512 32 0 19 1 134 164 2995 2964 PREDICTED: Brassica napus 28S ribosomal RNA (LOC125601643), rRNA blastn 32 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Brassica Brassica napus
17632881 17632881 PRJNA193544_S_NODE_494_length_317_cov_13366.173611_g479_i0 PRJNA193544 494 317 13366.173611 42370.77034687 Magnoliopsida 3398 Plants Plants 115 3.7300000000000006e-21   NTclustered gi|2645383891|ref|XR_009840450.1| 3691 g479 i0 86.239 22.9842271293375 109 12 34 2 34 141 2216 2110 PREDICTED: Populus nigra 28S ribosomal RNA (LOC133687102), rRNA blastn 7286 115 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malpighiales Salicaceae Populus Populus nigra
19491886 19491886 PRJNA193544_S_NODE_236_length_380_cov_9976.273504_g221_i0 PRJNA193544 236 380 9976.273504 37909.8393152 Brassica napus 3708 Plants Plants 52.8 0.036   NTclustered gi|2258135794|ref|XR_007334357.1| 3708 g221 i0 96.875 0.0842105263157895 32 0 8 1 350 380 2995 2964 PREDICTED: Brassica napus 28S ribosomal RNA (LOC125601643), rRNA blastn 32 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Brassica Brassica napus
21457022 21457022 PRJNA193544_S_NODE_777_length_276_cov_8.979757_g762_i0 PRJNA193544 777 276 8.979757 24.78412932 Magnoliopsida 3398 Plants Plants 54.7 0.007   NTclustered gi|1939055476|gb|MW172410.1| 3702 g762 i0 94.444 1.10144927536232 36 1 13 1 242 276 60871 60836 Arabidopsis thaliana NOR2 telomere junction genomic sequence blastn 304 54.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Arabidopsis Arabidopsis thaliana
24007229 24007229 PRJNA193544_S_NODE_599_length_301_cov_6.227941_g584_i0 PRJNA193544 599 301 6.227941 18.74610241 Glycine 3846 Plants Plants 529 1.0599999999999996e-145   NTclustered gi|2027446350|ref|XR_005890558.1| 3847 g584 i0 99.315 97.063122923588 292 2 97 0 1 292 1493 1784 PREDICTED: Glycine max 28S ribosomal RNA (LOC121174465), rRNA blastn 29216 529 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Glycine Glycine max
24007232 24007232 PRJNA193544_S_NODE_739_length_281_cov_2762.623016_g724_i0 PRJNA193544 739 281 2762.623016 7762.97067496 Magnoliopsida 3398 Plants Plants 281 3.04e-71   NTclustered gi|1484650211|ref|XR_003349480.1| 3469 g724 i0 93.264 68.3772241992882 193 10 68 3 1 192 46 236 PREDICTED: Papaver somniferum 18S ribosomal RNA (LOC113328622), rRNA blastn 19214 281 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Ranunculales Papaveraceae Papaver Papaver somniferum
28968801 28968801 PRJNA193544_S_NODE_968_length_254_cov_5.355556_g953_i0 PRJNA193544 968 254 5.355556 13.60311224 Arachis hypogaea 3818 Plants Plants 54.3 1.39e-6   NR ABH09321.1 3818 g953 i0 62.8 0.507874015748031 43 16 50.8 0 68 196 86 128 ABH09321.1 leucine rich protein [Arachis hypogaea] diamond 129 54.3 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Arachis Arachis hypogaea
29347678 29347678 PRJNA193544_S_NODE_1949_length_193_cov_23599.609756_g1934_i0 PRJNA193544 1949 193 23599.609756 45547.24682908 Brassica napus 3708 Plants Plants 43.9 8.19e-4   NR WZZ15440.1 3708 g1934 i0 48 0.77720207253886 50 24 74.6 1 17 160 1 50 WZZ15440.1 hypothetical protein YC2023_108529 [Brassica napus] diamond 150 43.9 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Brassica Brassica napus
29744019 29744019 PRJNA193544_S_NODE_1810_length_199_cov_20693.070588_g1795_i0 PRJNA193544 1810 199 20693.070588 41179.21047012 Streptophyta 35493 Plants Plants 52 4.93e-6   NR KAH8936970.1 53036 g1795 i0 68.6 5.89447236180905 35 11 52.8 0 75 179 8 42 KAH8936970.1 hypothetical protein BDL97_16G000300 [Sphagnum fallax] diamond 1173 52 1 Eukaryota Embryophyta Viridiplantae Streptophyta Sphagnopsida Sphagnales Sphagnaceae Sphagnum Sphagnum fallax
31306195 31306195 PRJNA193544_S_NODE_1375_length_220_cov_130.382199_g1360_i0 PRJNA193544 1375 220 130.38219900000001 286.8408378 Rubroshorea leprosula 152421 Plants Plants 52 1.58e-6   NR GKV53456.1 152421 g1360 i0 66.7 0.531818181818182 39 9 47.7 1 105 1 8 46 GKV53456.1 hypothetical protein SLEP1_g59978 [Rubroshorea leprosula] diamond 117 52 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malvales Dipterocarpaceae Rubroshorea Rubroshorea leprosula

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;