RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

23 rows where bioproject = "PRJNA193544", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 23 ✖

tax_clade 1

  • Discoba · 23 ✖

bioproject 1

  • PRJNA193544 · 23 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2330539 2330539 PRJNA193544_S_NODE_62_length_532_cov_7709.618290_g13_i2 PRJNA193544 62 532 7709.61829 41015.1693028 Naegleria 5761 Heterolobosea other_Eukaryota 869 0   NTclustered gi|2651357780|gb|PP174296.1| 36333 g13 i2 99.58 35.2612781954887 476 2 89 0 33 508 2279 1804 Naegleria clarki isolate P2881 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 18759 869 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria clarki
2916580 2916580 PRJNA193544_S_NODE_683_length_289_cov_48.961538_g668_i0 PRJNA193544 683 289 48.961538 141.49884482 Naegleria clarki 36333 Heterolobosea other_Eukaryota 512 1.02e-140   NTclustered gi|2651357780|gb|PP174296.1| 36333 g668 i0 99.643 32.2491349480969 280 1 97 0 2 281 3770 4049 Naegleria clarki isolate P2881 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 9320 512 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria clarki
3605711 3605711 PRJNA193544_S_NODE_2603_length_171_cov_16.161972_g2588_i0 PRJNA193544 2603 171 16.161972 27.63697212 Naegleria 5761 Heterolobosea other_Eukaryota 283 4.67e-72   NTclustered gi|2618963742|gb|OR769034.1| 5762 g2588 i0 100 89.4736842105263 153 0 89 0 19 171 447 295 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 15300 283 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
6157968 6157968 PRJNA193544_S_NODE_25_length_648_cov_31.576737_g19_i1 PRJNA193544 25 648 31.576737 204.61725576 Naegleria 5761 Heterolobosea other_Eukaryota 994 0   NTclustered gi|13398499|gb|AF338417.1| 36333 g19 i1 99.452 81.9799382716049 547 3 84 0 99 645 2481 1935 Naegleria clarki 18S ribosomal RNA gene, partial sequence blastn 53123 994 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria clarki
7433124 7433124 PRJNA193544_S_NODE_1946_length_193_cov_23929.975610_g1931_i0 PRJNA193544 1946 193 23929.97561 46184.8529273 Naegleria 5761 Heterolobosea other_Eukaryota 296 6.96e-76   NTclustered gi|2618963742|gb|OR769034.1| 5762 g1931 i0 100 79.8704663212435 160 0 83 0 34 193 670 511 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 15415 296 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
8019290 8019290 PRJNA193544_S_NODE_767_length_277_cov_15722.991935_g752_i0 PRJNA193544 767 277 15722.991935 43552.68765995 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 110 1.49e-19   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g752 i0 81.295 1.51263537906137 139 22 49 3 28 164 3191 3055 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 419 110 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
8707983 8707983 PRJNA193544_S_NODE_27_length_647_cov_5962.846278_g19_i2 PRJNA193544 27 647 5962.846278 38579.61541866 Naegleria 5761 Heterolobosea other_Eukaryota 1131 0   NTclustered gi|13398499|gb|AF338417.1| 36333 g19 i2 100 92.4744976816074 612 0 95 0 33 644 2546 1935 Naegleria clarki 18S ribosomal RNA gene, partial sequence blastn 59831 1131 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria clarki
9983265 9983265 PRJNA193544_S_NODE_1088_length_244_cov_5.948837_g1073_i0 PRJNA193544 1088 244 5.948837 14.51516228 Naegleria 5761 Heterolobosea other_Eukaryota 446 8.639999999999999e-121   NTclustered gi|2618963742|gb|OR769034.1| 5762 g1073 i0 99.59 43.6516393442623 244 1 100 0 1 244 5099 5342 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 10651 446 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
10569948 10569948 PRJNA193544_S_NODE_1489_length_214_cov_28.448649_g1474_i0 PRJNA193544 1489 214 28.448649 60.88010886 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 370 4.58e-98   NTclustered gi|2618963742|gb|OR769034.1| 5762 g1474 i0 99.507 40.2196261682243 203 1 95 0 1 203 4864 5066 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 8607 370 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
10569984 10569984 PRJNA193544_S_NODE_469_length_323_cov_5.493197_g454_i0 PRJNA193544 469 323 5.493197 17.74302631 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 564 3.1499999999999995e-156   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g454 i0 98.142 37.8328173374613 323 6 100 0 1 323 4100 3778 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12220 564 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
12533883 12533883 PRJNA193544_S_NODE_290_length_362_cov_28.315315_g275_i0 PRJNA193544 290 362 28.315315 102.5014403 Naegleria 5761 Heterolobosea other_Eukaryota 444 4.85e-120   NTclustered gi|2618963742|gb|OR769034.1| 5762 g275 i0 99.588 27.5635359116022 243 1 67 0 111 353 3968 4210 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 9978 444 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
14394974 14394974 PRJNA193544_S_NODE_2172_length_184_cov_22706.838710_g2157_i0 PRJNA193544 2172 184 22706.83871 41780.5832264 Vahlkampfiidae sp. SG-2014 1445705 Heterolobosea other_Eukaryota 267 5.149999999999999e-67   NTclustered gi|574484052|gb|KF547913.1| 1445705 g2157 i0 98.039 7.63586956521739 153 3 83 0 1 153 162 314 Vahlkampfiidae sp. SG-2014 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1405 267 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae   Vahlkampfiidae sp. SG-2014
15668708 15668708 PRJNA193544_S_NODE_493_length_317_cov_13387.052083_g478_i0 PRJNA193544 493 317 13387.052083 42436.95510311 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 176 1.69e-39   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g478 i0 90.37 3.93375394321767 135 12 43 1 150 284 2923 3056 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 1247 176 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
15668712 15668712 PRJNA193544_S_NODE_633_length_296_cov_13880.868914_g618_i0 PRJNA193544 633 296 13880.868914 41087.37198544 Naegleria clarki 36333 Heterolobosea other_Eukaryota 486 6.359999999999999e-133   NTclustered gi|2651357780|gb|PP174296.1| 36333 g618 i0 100 57.1655405405405 263 0 89 0 34 296 2726 2464 Naegleria clarki isolate P2881 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 16921 486 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria clarki
15668721 15668721 PRJNA193544_S_NODE_953_length_255_cov_17028.066372_g938_i0 PRJNA193544 953 255 17028.066372 43421.5692486 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 182 2.83e-41   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g938 i0 90.58 5.14509803921569 138 11 54 2 86 222 2920 3056 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 1312 182 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
16357674 16357674 PRJNA193544_S_NODE_53_length_551_cov_7693.873563_g44_i0 PRJNA193544 53 551 7693.873563 42393.24333213 Naegleria 5761 Heterolobosea other_Eukaryota 957 0   NTclustered gi|2618963742|gb|OR769034.1| 5762 g44 i0 100 91.524500907441 518 0 94 0 34 551 1880 1363 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 50430 957 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
17632858 17632858 PRJNA193544_S_NODE_14_length_701_cov_22.416667_g13_i0 PRJNA193544 14 701 22.416667 157.14083567 Naegleria 5761 Heterolobosea other_Eukaryota 1127 0   NTclustered gi|2651357780|gb|PP174296.1| 36333 g13 i0 97.428 32.6918687589158 661 17 94 0 17 677 2464 1804 Naegleria clarki isolate P2881 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 22917 1138 0.990333919156415 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria clarki
17632868 17632868 PRJNA193544_S_NODE_214_length_391_cov_181.350829_g199_i0 PRJNA193544 214 391 181.350829 709.08174139 Naegleria 5761 Heterolobosea other_Eukaryota 673 0   NTclustered gi|2618963742|gb|OR769034.1| 5762 g199 i0 99.728 10.2071611253197 367 1 94 0 25 391 5806 5440 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 3991 673 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
21457015 21457015 PRJNA193544_S_NODE_377_length_341_cov_24.339744_g362_i0 PRJNA193544 377 341 24.339744 82.99852704 Naegleria 5761 Heterolobosea other_Eukaryota 625 1.5099999999999995e-174   NTclustered gi|2618963742|gb|OR769034.1| 5762 g362 i0 99.707 24.0615835777126 341 1 100 0 1 341 3623 3963 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 8205 630 0.992063492063492 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
22042515 22042515 PRJNA193544_S_NODE_1978_length_192_cov_21515.374233_g1963_i0 PRJNA193544 1978 192 21515.374233 41309.51852736 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 279 6.97e-71   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g1963 i0 98.125 2.5 160 3 83 0 1 160 3623 3782 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 480 279 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
22042547 22042547 PRJNA193544_S_NODE_78_length_511_cov_7292.464730_g67_i0 PRJNA193544 78 511 7292.46473 37264.4947703 Parafumarolamoeba stagnalis 2872509 Heterolobosea other_Eukaryota 697 0   NTclustered gi|2086087549|gb|MZ919148.1| 2872509 g67 i0 92.931 14.4951076320939 481 31 94 3 1 478 535 1015 Parafumarolamoeba stagnalis small subunit ribosomal RNA gene, partial sequence blastn 7407 697 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Parafumarolamoeba Parafumarolamoeba stagnalis
22731997 22731997 PRJNA193544_S_NODE_18_length_672_cov_23.488336_g13_i1 PRJNA193544 18 672 23.488336 157.84161792 Naegleria 5761 Heterolobosea other_Eukaryota 1153 0   NTclustered gi|2618963742|gb|OR769034.1| 5762 g13 i1 98.915 33.6041666666667 645 7 96 0 4 648 3011 2367 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 22582 1158 0.995682210708117 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
24007231 24007231 PRJNA193544_S_NODE_679_length_290_cov_11.003831_g664_i0 PRJNA193544 679 290 11.003831 31.9111099 Naegleria 5761 Heterolobosea other_Eukaryota 531 2.83e-146   NTclustered gi|399764194|gb|JQ271705.1| 36333 g664 i0 100 91.8448275862069 287 0 99 0 4 290 314 28 Naegleria clarki strain TMR 18S ribosomal RNA gene, partial sequence blastn 26635 531 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria clarki

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;