RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA193544", tax_clade = "CRuMs" and tax_superkingdom = "Eukaryota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Eukaryota · 6 ✖

tax_clade 1

  • CRuMs · 6 ✖

bioproject 1

  • PRJNA193544 · 6 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9293956 9293956 PRJNA193544_S_NODE_1348_length_222_cov_8.005181_g1333_i0 PRJNA193544 1348 222 8.005181 17.77150182 Rigifila ramosa 1122280 Root_unresolved Root_unresolved 348 2.2400000000000002e-91   NTclustered gi|390124887|dbj|AB686267.1| 1122280 g1333 i0 95.045 75.3648648648649 222 9 99 2 1 221 39 259 Rigifila ramosa gene for large subunit ribosomal RNA, partial sequence, strain: YPF923 blastn 16731 348 1 Eukaryota CRuMs       Rigifilida   Rigifila Rigifila ramosa
11844426 11844426 PRJNA193544_S_NODE_1150_length_238_cov_16951.746411_g1135_i0 PRJNA193544 1150 238 16951.746411 40345.15645818 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 224 4.28e-54   NTclustered gi|300078503|gb|GU001165.1| 238746 g1135 i0 89.326 68.3613445378151 178 19 75 0 57 234 1998 1821 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 16270 224 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
14394990 14394990 PRJNA193544_S_NODE_3152_length_157_cov_5.078125_g3137_i0 PRJNA193544 3152 157 5.078125 7.97265625 Rigifila ramosa 1122280 Root_unresolved Root_unresolved 244 1.99e-60   NTclustered gi|390124887|dbj|AB686267.1| 1122280 g3137 i0 94.937 75.5222929936306 158 4 100 4 1 157 3355 3509 Rigifila ramosa gene for large subunit ribosomal RNA, partial sequence, strain: YPF923 blastn 11857 244 1 Eukaryota CRuMs       Rigifilida   Rigifila Rigifila ramosa
15668662 15668662 PRJNA193544_S_NODE_1333_length_222_cov_20266.611399_g1318_i0 PRJNA193544 1333 222 20266.611399 44991.87730578 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 239 1.41e-58   NTclustered gi|300078503|gb|GU001165.1| 238746 g1318 i0 89.785 81.4504504504504 186 19 84 0 5 190 1821 2006 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 18082 239 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
16943148 16943148 PRJNA193544_S_NODE_1834_length_198_cov_21039.798817_g1819_i0 PRJNA193544 1834 198 21039.798817 41658.80165766 Rigifila ramosa 1122280 Root_unresolved Root_unresolved 239 1.23e-58   NTclustered gi|390124886|dbj|AB686266.1| 1122280 g1819 i0 93.252 83.6363636363636 163 10 82 1 34 196 522 361 Rigifila ramosa gene for small subunit ribosomal RNA, partial sequence, strain: YPF923 blastn 16560 239 1 Eukaryota CRuMs       Rigifilida   Rigifila Rigifila ramosa
20767435 20767435 PRJNA193544_S_NODE_3397_length_152_cov_5.065041_g3382_i0 PRJNA193544 3397 152 5.065041 7.69886232 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 220 3.22e-53   NTclustered gi|300078503|gb|GU001165.1| 238746 g3382 i0 94.406 0.940789473684211 143 8 94 0 1 143 4094 4236 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 143 220 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;