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contig_metadata

5 rows where bioproject = "PRJNA188516" and tax_superkingdom = "Archaea"

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tax_kingdom 2

analysis 2

tax_superkingdom 1

  • Archaea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA188516 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6743486 6743486 PRJNA188516_P_NODE_4106_length_169_cov_0.866667_g4056_i0 PRJNA188516 4106 169 0.866667 1.46466723 uncultured crenarchaeote 29281 Archaea Archaea 243 7.8e-60   NTclustered gi|22797874|emb|AJ496176.1| 29281 g4056 i0 93.293 24.1301775147929 164 11 97 0 1 164 7623 7460 Uncultured crenarchaeote 34 kb genomic fragment blastn 4078 243 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
27390200 27390200 PRJNA188516_P_NODE_5463_length_164_cov_0.904348_g5413_i0 PRJNA188516 5463 164 0.904348 1.48313072 archaeon 1906665 Archaea Archaea 83.6 3.87e-17   NR MDP2438577.1 1906665 g5413 i0 75 0.878048780487805 48 12 87.8 0 144 1 13 60 MDP2438577.1 filamin/ABP280 repeat domain-containing protein [archaeon] diamond 144 83.6 1 Archaea               archaeon
30200096 30200096 PRJNA188516_P_NODE_1112_length_357_cov_1.321429_g1062_i0 PRJNA188516 1112 357 1.321429 4.71750153 Candidatus Bathyarchaeia archaeon 3045160 Archaea Archaea 44.7 0.0109   NR MFB0503014.1 3045160 g1062 i0 43.2 0.369747899159664 44 25 37 0 10 141 8 51 MFB0503014.1 nuclear transport factor 2 family protein [Candidatus Bathyarchaeia archaeon] diamond 132 44.7 1 Archaea   Thermoproteati Candidatus Bathyarchaeota Candidatus Bathyarchaeia       Candidatus Bathyarchaeia archaeon
30200098 30200098 PRJNA188516_P_NODE_6092_length_162_cov_0.920354_g6042_i0 PRJNA188516 6092 162 0.920354 1.49097348 Halalkalicoccus tibetensis 175632 Archaea Archaea 44.7 0.00266   NR WP_340603730.1 175632 g6042 i0 38.5 0.962962962962963 52 32 96.3 0 162 7 155 206 WP_340603730.1 translation elongation factor EF-1 subunit alpha [Halalkalicoccus tibetensis] diamond 156 44.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus tibetensis
32540294 32540294 PRJNA188516_P_NODE_4839_length_166_cov_0.888889_g4789_i0 PRJNA188516 4839 166 0.888889 1.47555574 archaeon 1906665 Archaea Archaea 95.1 4.71e-21   NR RYG69930.1 1906665 g4789 i0 83.6 1.98795180722892 55 9 99.4 0 165 1 156 210 RYG69930.1 MAG: hypothetical protein EON64_01505 [archaeon] diamond 330 95.1 1 Archaea               archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;