RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA188516" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA188516 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13119558 13119558 PRJNA188516_P_NODE_2391_length_222_cov_1.335260_g2341_i0 PRJNA188516 2391 222 1.33526 2.9642772 Rhizamoeba sp. ATCC 50933 497999 Tubulinea other_Eukaryota 233 6.549999999999999e-57   NTclustered gi|167859754|gb|EU273459.1| 497999 g2341 i0 85.778 92.4864864864865 225 26 100 6 1 222 515 294 Rhizamoeba sp. ATCC 50933 actin gene, partial cds blastn 20532 233 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba sp. ATCC 50933
19491776 19491776 PRJNA188516_P_NODE_2476_length_218_cov_1.230769_g2426_i0 PRJNA188516 2476 218 1.230769 2.68307642 Glaeseria mira 242547 Tubulinea other_Eukaryota 121 5.209999999999999e-23   NTclustered gi|33946352|gb|AY294155.1| 242547 g2426 i0 80.921 14.5412844036697 152 29 70 0 2 153 202 51 Glaeseria mira actin mRNA, partial cds blastn 3170 121 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Glaeseria Glaeseria mira
31748946 31748946 PRJNA188516_P_NODE_5177_length_165_cov_0.896552_g5127_i0 PRJNA188516 5177 165 0.896552 1.4793108 Amoeba proteus 5775 Tubulinea other_Eukaryota 99.4 5.96e-23   NR AAP88974.1 5775 g5127 i0 87 4.98181818181818 54 7 98.2 0 162 1 11 64 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 822 99.4 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;