RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA188516" and tax_phylum = "Spirochaetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA188516 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18906646 18906646 PRJNA188516_P_NODE_4375_length_168_cov_0.873950_g4325_i0 PRJNA188516 4375 168 0.87395 1.468236 Treponema 157 Bacteria Bacteria 305 9.81e-79   NTclustered gi|1807378492|gb|CP048020.1| 69710 g4325 i0 99.405 191.488095238095 168 1 100 0 1 168 2078113 2078280 Treponema vincentii strain OMZ 804 chromosome, complete genome blastn 32170 305 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema vincentii
21456966 21456966 PRJNA188516_P_NODE_4937_length_166_cov_0.888889_g4887_i0 PRJNA188516 4937 166 0.888889 1.47555574 Treponema 157 Bacteria Bacteria 302 1.2500000000000001e-77   NTclustered gi|2265113193|gb|CP051148.1| 69710 g4887 i0 99.398 9 166 1 100 0 1 166 618873 619038 Treponema vincentii strain OMZ 861 chromosome, complete genome blastn 1494 302 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema vincentii
27136719 27136719 PRJNA188516_P_NODE_5962_length_162_cov_0.920354_g5912_i0 PRJNA188516 5962 162 0.920354 1.49097348 Spirochaetota bacterium 2202144 Bacteria Bacteria 48.9 8.45e-5   NR HMB20739.1 2202144 g5912 i0 40.7 1.90740740740741 54 32 100 0 162 1 321 374 HMB20739.1 aspartate aminotransferase family protein [Spirochaetota bacterium] diamond 309 48.9 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;