contig_metadata
15 rows where bioproject = "PRJNA188516" and tax_phylum = "Oomycota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4192942 | 4192942 | PRJNA188516_P_NODE_5824_length_163_cov_0.912281_g5774_i0 | PRJNA188516 | 5824 | 163 | 0.912281 | 1.48701803 | Phytophthora sojae | 67593 | SAR_Eukaryotes | SAR_Eukaryotes | 95.3 | 2.23e-15 | NTclustered | gi|695375632|ref|XM_009517294.1| | 67593 | g5774 | i0 | 80.992 | 0.742331288343558 | 121 | 21 | 74 | 2 | 29 | 148 | 268 | 149 | Phytophthora sojae hypothetical protein partial mRNA | blastn | 121 | 95.3 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora sojae | ||
| 10569835 | 10569835 | PRJNA188516_P_NODE_1789_length_263_cov_1.705607_g1739_i0 | PRJNA188516 | 1789 | 263 | 1.705607 | 4.48574641 | [Pythium] brassicae (nom. inval.) | 1485010 | SAR_Eukaryotes | SAR_Eukaryotes | 123 | 2.22e-32 | NR | TYZ67175.1 | 1485010 | g1739 | i0 | 67.4 | 1.96197718631179 | 86 | 26 | 98.1 | 1 | 262 | 5 | 198 | 281 | TYZ67175.1 hypothetical protein PybrP1_001669, partial [[Pythium] brassicae (nom. inval.)] | diamond | 516 | 123 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Pythiales | Pythiaceae | Globisporangium | [Pythium] brassicae (nom. inval.) | ||
| 14394887 | 14394887 | PRJNA188516_P_NODE_3372_length_185_cov_1.147059_g3322_i0 | PRJNA188516 | 3372 | 185 | 1.147059 | 2.12205915 | Phytophthora cinnamomi | 4785 | SAR_Eukaryotes | SAR_Eukaryotes | 106 | 1.2e-18 | NTclustered | gi|2795059860|ref|XM_067943008.1| | 4785 | g3322 | i0 | 78.571 | 5.53513513513514 | 168 | 31 | 90 | 4 | 10 | 176 | 211 | 374 | Phytophthora cinnamomi 40S ribosomal protein S3a (IUM83_18029), partial mRNA | blastn | 1024 | 106 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora cinnamomi | ||
| 16943100 | 16943100 | PRJNA188516_P_NODE_5334_length_164_cov_1.356522_g5284_i0 | PRJNA188516 | 5334 | 164 | 1.356522 | 2.22469608 | Aphanomyces invadans | 157072 | SAR_Eukaryotes | SAR_Eukaryotes | 106 | 3.84e-27 | NR | XP_008876054.1 | 157072 | g5284 | i0 | 96.3 | 0.98780487804878 | 54 | 2 | 98.8 | 0 | 162 | 1 | 44 | 97 | XP_008876054.1 hypothetical protein H310_11242 [Aphanomyces invadans] | diamond | 162 | 106 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Verrucalvaceae | Aphanomyces | Aphanomyces invadans | ||
| 20767342 | 20767342 | PRJNA188516_P_NODE_3857_length_172_cov_1.382114_g3807_i0 | PRJNA188516 | 3857 | 172 | 1.382114 | 2.37723608 | Aphanomyces invadans | 157072 | SAR_Eukaryotes | SAR_Eukaryotes | 228 | 2.2299999999999997e-55 | NTclustered | gi|673047298|ref|XM_008879388.1| | 157072 | g3807 | i0 | 91.515 | 2.44186046511628 | 165 | 14 | 96 | 0 | 1 | 165 | 183 | 19 | Aphanomyces invadans 60S ribosomal protein L10 mRNA | blastn | 420 | 228 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Verrucalvaceae | Aphanomyces | Aphanomyces invadans | ||
| 22042438 | 22042438 | PRJNA188516_P_NODE_3998_length_169_cov_1.300000_g3948_i0 | PRJNA188516 | 3998 | 169 | 1.3 | 2.197 | Albugo laibachii Nc14 | 890382 | SAR_Eukaryotes | SAR_Eukaryotes | 76.6 | 1.55e-14 | NR | CCA20828.1 | 890382 | g3948 | i0 | 55.6 | 3.62130177514793 | 54 | 24 | 95.9 | 0 | 162 | 1 | 242 | 295 | CCA20828.1 hypothetical protein SORBIDRAFT_01g039390 [Albugo laibachii Nc14] | diamond | 612 | 76.6 | 1 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Albuginales | Albuginaceae | Albugo | Albugo laibachii | ||
| 22042448 | 22042448 | PRJNA188516_P_NODE_4558_length_167_cov_1.279661_g4508_i0 | PRJNA188516 | 4558 | 167 | 1.279661 | 2.13703387 | Aphanomyces invadans | 157072 | SAR_Eukaryotes | SAR_Eukaryotes | 180 | 6.16e-41 | NTclustered | gi|673042380|ref|XM_008876929.1| | 157072 | g4508 | i0 | 86.875 | 3.46706586826347 | 160 | 21 | 96 | 0 | 1 | 160 | 249 | 408 | Aphanomyces invadans 40S ribosomal protein partial mRNA | blastn | 579 | 180 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Verrucalvaceae | Aphanomyces | Aphanomyces invadans | ||
| 28368712 | 28368712 | PRJNA188516_P_NODE_3626_length_178_cov_1.209302_g3576_i0 | PRJNA188516 | 3626 | 178 | 1.209302 | 2.15255756 | Thraustotheca clavata | 74557 | SAR_Eukaryotes | SAR_Eukaryotes | 96.3 | 2.01e-21 | NR | OQR99116.1 | 74557 | g3576 | i0 | 81.4 | 0.99438202247191 | 59 | 11 | 99.4 | 0 | 178 | 2 | 119 | 177 | OQR99116.1 isocitrate lyase [Thraustotheca clavata] | diamond | 177 | 96.3 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Achlyaceae | Thraustotheca | Thraustotheca clavata | ||
| 29270498 | 29270498 | PRJNA188516_P_NODE_3009_length_197_cov_1.054054_g2959_i0 | PRJNA188516 | 3009 | 197 | 1.054054 | 2.07648638 | Eukaryota | 2759 | SAR_Eukaryotes | SAR_Eukaryotes | 88.2 | 2.46e-20 | NR | OWZ14719.1 | 4795 | g2959 | i0 | 75.4 | 20.741116751269 | 57 | 14 | 86.8 | 0 | 196 | 26 | 91 | 147 | OWZ14719.1 60S ribosomal protein L27a, partial [Phytophthora megakarya] | diamond | 4086 | 89 | 0.991011235955056 | Eukaryota | Sar | Oomycota | Peronosporomycetes | Peronosporales | Peronosporaceae | Phytophthora | Phytophthora megakarya | ||
| 29473617 | 29473617 | PRJNA188516_P_NODE_4030_length_169_cov_0.866667_g3980_i0 | PRJNA188516 | 4030 | 169 | 0.866667 | 1.46466723 | Aphanomyces euteiches | 100861 | SAR_Eukaryotes | SAR_Eukaryotes | 111 | 1.33e-29 | NR | KAF0743747.1 | 100861 | g3980 | i0 | 96.4 | 0.976331360946746 | 55 | 2 | 97.6 | 0 | 3 | 167 | 60 | 114 | KAF0743747.1 hypothetical protein Ae201684_001401 [Aphanomyces euteiches] | diamond | 165 | 111 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Verrucalvaceae | Aphanomyces | Aphanomyces euteiches | ||
| 30327228 | 30327228 | PRJNA188516_P_NODE_5972_length_162_cov_0.920354_g5922_i0 | PRJNA188516 | 5972 | 162 | 0.920354 | 1.49097348 | Aphanomyces astaci | 112090 | SAR_Eukaryotes | SAR_Eukaryotes | 103 | 3.63e-25 | NR | KAF0716188.1 | 112090 | g5922 | i0 | 88.7 | 0.981481481481482 | 53 | 6 | 98.1 | 0 | 160 | 2 | 43 | 95 | KAF0716188.1 hypothetical protein AaE_011167 [Aphanomyces astaci] | diamond | 159 | 103 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Verrucalvaceae | Aphanomyces | Aphanomyces astaci | ||
| 30660435 | 30660435 | PRJNA188516_P_NODE_2973_length_198_cov_1.395973_g2923_i0 | PRJNA188516 | 2973 | 198 | 1.395973 | 2.76402654 | Aphanomyces | 100860 | SAR_Eukaryotes | SAR_Eukaryotes | 103 | 3.2199999999999993e-24 | NR | KAH9152901.1 | 100861 | g2923 | i0 | 76.6 | 2.89393939393939 | 64 | 15 | 97 | 0 | 193 | 2 | 263 | 326 | KAH9152901.1 hypothetical protein LEN26_003626, partial [Aphanomyces euteiches] | diamond | 573 | 104 | 0.990384615384615 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Verrucalvaceae | Aphanomyces | Aphanomyces euteiches | ||
| 31116342 | 31116342 | PRJNA188516_P_NODE_4175_length_169_cov_0.866667_g4125_i0 | PRJNA188516 | 4175 | 169 | 0.866667 | 1.46466723 | Saprolegnia parasitica CBS 223.65 | 695850 | SAR_Eukaryotes | SAR_Eukaryotes | 85.1 | 5.57e-18 | NR | XP_012196032.1 | 695850 | g4125 | i0 | 68.6 | 0.905325443786982 | 51 | 16 | 90.5 | 0 | 168 | 16 | 82 | 132 | XP_012196032.1 hypothetical protein SPRG_02090 [Saprolegnia parasitica CBS 223.65] | diamond | 153 | 85.1 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Saprolegniaceae | Saprolegnia | Saprolegnia parasitica | ||
| 32033844 | 32033844 | PRJNA188516_P_NODE_5858_length_163_cov_0.903509_g5808_i0 | PRJNA188516 | 5858 | 163 | 0.903509 | 1.47271967 | Aphanomyces stellatus | 120398 | SAR_Eukaryotes | SAR_Eukaryotes | 105 | 9.54e-25 | NR | KAF0687498.1 | 120398 | g5808 | i0 | 78.2 | 1.01226993865031 | 55 | 11 | 99.4 | 1 | 2 | 163 | 385 | 439 | KAF0687498.1 hypothetical protein As57867_020702 [Aphanomyces stellatus] | diamond | 165 | 105 | 1 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Verrucalvaceae | Aphanomyces | Aphanomyces stellatus | ||
| 32494783 | 32494783 | PRJNA188516_P_NODE_3019_length_197_cov_0.966216_g2969_i0 | PRJNA188516 | 3019 | 197 | 0.966216 | 1.90344552 | Aphanomyces | 100860 | SAR_Eukaryotes | SAR_Eukaryotes | 70.5 | 2.43e-13 | NR | KAF0744591.1 | 100861 | g2969 | i0 | 82.2 | 2.07106598984772 | 45 | 8 | 68.5 | 0 | 196 | 62 | 18 | 62 | KAF0744591.1 hypothetical protein Ae201684_001059 [Aphanomyces euteiches] | diamond | 408 | 70.9 | 0.994358251057828 | Eukaryota | Sar | Oomycota | Saprolegniomycetes | Saprolegniales | Verrucalvaceae | Aphanomyces | Aphanomyces euteiches |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;