RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA188516" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA188516 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31116343 31116343 PRJNA188516_P_NODE_4395_length_168_cov_0.873950_g4345_i0 PRJNA188516 4395 168 0.87395 1.468236 Anaerolineales bacterium 2073117 Bacteria Bacteria 90.1 4.44e-20   NR HEX5839507.1 2073117 g4345 i0 72.7 2.94642857142857 55 15 98.2 0 167 3 72 126 HEX5839507.1 hypothetical protein [Anaerolineales bacterium] diamond 495 90.1 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
32823587 32823587 PRJNA188516_P_NODE_5020_length_166_cov_0.888889_g4970_i0 PRJNA188516 5020 166 0.888889 1.47555574 Chloroflexia bacterium 2448782 Bacteria Bacteria 41.2 0.0128   NR HKP51094.1 2448782 g4970 i0 48.9 0.849397590361446 47 22 83.1 2 5 142 38 83 HKP51094.1 hypothetical protein [Chloroflexia bacterium] diamond 141 41.2 1 Bacteria   Bacillati Chloroflexota Chloroflexia       Chloroflexia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;