RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA188516", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA188516 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26757280 26757280 PRJNA188516_P_NODE_4241_length_169_cov_0.866667_g4191_i0 PRJNA188516 4241 169 0.866667 1.46466723 Myxococcales bacterium 2026763 Bacteria Bacteria 52.4 2.54e-6   NR MCA9507754.1 2026763 g4191 i0 51.9 0.958579881656805 54 25 95.9 1 3 164 90 142 MCA9507754.1 hypothetical protein [Myxococcales bacterium] diamond 162 52.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
30327227 30327227 PRJNA188516_P_NODE_5032_length_166_cov_0.888889_g4982_i0 PRJNA188516 5032 166 0.888889 1.47555574 Myxococcales bacterium 2026763 Bacteria Bacteria 45.1 4.51e-4   NR MAD60815.1 2026763 g4982 i0 59.5 0.759036144578313 42 17 75.9 0 39 164 4 45 MAD60815.1 hypothetical protein [Myxococcales bacterium] diamond 126 45.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;