RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA188516", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA188516 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14394892 14394892 PRJNA188516_P_NODE_3752_length_174_cov_1.800000_g3702_i0 PRJNA188516 3752 174 1.8 3.132 Arcobacter ellisii 913109 Bacteria Bacteria 316 4.7e-82   NTclustered gi|1474793334|gb|CP032097.1| 913109 g3702 i0 99.425 359.942528735632 174 1 100 0 1 174 953984 953811 Arcobacter ellisii strain LMG 26155 chromosome, complete genome blastn 62630 316 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter ellisii
18906639 18906639 PRJNA188516_P_NODE_2355_length_224_cov_0.977143_g2305_i0 PRJNA188516 2355 224 0.977143 2.18880032 Campylobacter 194 Bacteria Bacteria 411 2.8499999999999995e-110   NTclustered gi|1483583505|emb|LT631429.1| 204 g2305 i0 100 243.691964285714 222 0 99 0 3 224 29760 29981 Campylobacter showae genome assembly, plasmid: V blastn 54587 411 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;