RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA188516", tax_kingdom = "Pseudomonadati" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA188516 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28210763 28210763 PRJNA188516_P_NODE_2686_length_209_cov_0.975000_g2636_i0 PRJNA188516 2686 209 0.975 2.03775 Acidobacteriota bacterium 1978231 Bacteria Bacteria 54.3 1.96e-6   NR MBX3265733.1 1978231 g2636 i0 47.6 0.602870813397129 42 21 60.3 1 208 83 191 231 MBX3265733.1 hypothetical protein [Acidobacteriota bacterium] diamond 126 54.3 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
32002179 32002179 PRJNA188516_P_NODE_2918_length_200_cov_1.377483_g2868_i0 PRJNA188516 2918 200 1.377483 2.754966 Candidatus Sulfotelmatobacter sp. 2771375 Bacteria Bacteria 42 0.0375   NR HEY6767406.1 2771375 g2868 i0 35.8 0.795 53 28 79.5 1 187 29 81 127 HEY6767406.1 hypothetical protein [Candidatus Sulfotelmatobacter sp.] diamond 159 42 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Candidatus Korobacteraceae Candidatus Sulfotelmatobacter Candidatus Sulfotelmatobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;