RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA188516", tax_kingdom = "Metazoa" and tax_phylum = "Cnidaria"

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tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA188516 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27565498 27565498 PRJNA188516_P_NODE_2464_length_219_cov_0.917647_g2414_i0 PRJNA188516 2464 219 0.917647 2.00964693 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 107 6.520000000000001e-27   NR XP_027041682.1 46731 g2414 i0 72.6 21 73 20 100 0 219 1 3 75 XP_027041682.1 40S ribosomal protein S8-like [Pocillopora damicornis] diamond 4599 108 0.990740740740741 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Scleractinia Pocilloporidae Pocillopora Pocillopora damicornis
29063559 29063559 PRJNA188516_P_NODE_4688_length_167_cov_0.881356_g4638_i0 PRJNA188516 4688 167 0.881356 1.47186452 Clytia hemisphaerica 252671 Cnidaria other_Eukaryota 50.4 1.41e-5   NR XP_066921323.1 252671 g4638 i0 46.9 2.67664670658683 49 26 88 0 11 157 33 81 XP_066921323.1 uncharacterized protein [Clytia hemisphaerica] diamond 447 50.4 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Leptothecata Clytiidae Clytia Clytia hemisphaerica
29965435 29965435 PRJNA188516_P_NODE_6091_length_162_cov_0.920354_g6041_i0 PRJNA188516 6091 162 0.920354 1.49097348 Hydrozoa 6074 Cnidaria other_Eukaryota 103 4.78e-24   NR XP_065669601.1 6087 g6041 i0 85.2 10 54 8 100 0 162 1 313 366 XP_065669601.1 periodic tryptophan protein 2 homolog isoform X2 [Hydra vulgaris] diamond 1620 104 0.990384615384615 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Anthoathecata Hydridae Hydra Hydra vulgaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;