RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA188516" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 9 ✖

bioproject 1

  • PRJNA188516 · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10569858 10569858 PRJNA188516_P_NODE_2769_length_206_cov_0.993631_g2719_i0 PRJNA188516 2769 206 0.993631 2.04687986 Chlamydomonas reinhardtii 3055 Plants Plants 97.1 8.2e-16   NTclustered gi|2082260409|ref|XM_001702296.2| 3055 g2719 i0 95.082 21.2087378640777 61 3 30 0 2 62 252 312 Chlamydomonas reinhardtii ribosomal protein S17 (CHLRE_12g498250v5), mRNA blastn 4369 97.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
20767303 20767303 PRJNA188516_P_NODE_1697_length_272_cov_1.632287_g1647_i0 PRJNA188516 1697 272 1.632287 4.43982064 Coccomyxa subellipsoidea C-169 574566 Plants Plants 132 5.74e-36   NR XP_005643653.1 574566 g1647 i0 69.7 4.90808823529412 89 27 98.2 0 5 271 106 194 XP_005643653.1 60S ribosomal protein L7 [Coccomyxa subellipsoidea C-169] diamond 1335 132 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
28197013 28197013 PRJNA188516_P_NODE_3506_length_181_cov_1.181818_g3456_i0 PRJNA188516 3506 181 1.181818 2.13909058 Eukaryota 2759 Plants Plants 51.6 7.49e-6   NR WIA28302.1 3088 g3456 i0 66.7 8.13812154696133 36 12 59.7 0 3 110 86 121 WIA28302.1 hypothetical protein OEZ86_010854 [Tetradesmus obliquus] diamond 1473 52 0.992307692307692 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
28747692 28747692 PRJNA188516_P_NODE_4007_length_169_cov_1.300000_g3957_i0 PRJNA188516 4007 169 1.3 2.197 Prototheca wickerhamii 3111 Plants Plants 49.3 4.76e-5   NR KAK2079365.1 3111 g3957 i0 37 0.958579881656805 54 34 95.9 0 167 6 156 209 KAK2079365.1 hypothetical protein QBZ16_003056 [Prototheca wickerhamii] diamond 162 49.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
28905307 28905307 PRJNA188516_P_NODE_3748_length_174_cov_2.080000_g3698_i0 PRJNA188516 3748 174 2.08 3.6192 Trebouxia sp. C 2796353 Plants Plants 64.3 1.78e-11   NR KAL0042167.1 2905653 g3698 i0 61.4 3.25862068965517 44 17 75.9 0 33 164 5 48 KAL0042167.1 hypothetical protein WJX77_005300 [Trebouxia sp. C0004] diamond 567 64.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. C0004
29631478 29631478 PRJNA188516_P_NODE_2790_length_205_cov_1.493590_g2740_i0 PRJNA188516 2790 205 1.49359 3.0618595 Pedinophyceae sp. YPF-7 765719 Plants Plants 82.4 2.41e-16   NR CAG9467028.1 765719 g2740 i0 55.2 6.81951219512195 67 30 98 0 1 201 617 683 CAG9467028.1 unnamed protein product [Pedinophyceae sp. YPF-701] diamond 1398 82.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Pedinophyceae       Pedinophyceae sp. YPF-701
29757934 29757934 PRJNA188516_P_NODE_5451_length_164_cov_0.904348_g5401_i0 PRJNA188516 5451 164 0.904348 1.48313072 Chlorella vulgaris 3077 Plants Plants 63.2 2.91e-10   NR KAI3430572.1 3077 g5401 i0 49.1 2.50609756097561 53 27 97 0 1 159 28 80 KAI3430572.1 hypothetical protein D9Q98_005165 [Chlorella vulgaris] diamond 411 63.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella vulgaris
31337807 31337807 PRJNA188516_P_NODE_5216_length_165_cov_0.896552_g5166_i0 PRJNA188516 5216 165 0.896552 1.4793108 Astrephomene gubernaculifera 47775 Plants Plants 89.7 3.51e-19   NR GFR43178.1 47775 g5166 i0 79.2 1.94545454545455 53 11 96.4 0 163 5 425 477 GFR43178.1 hypothetical protein Agub_g4228 [Astrephomene gubernaculifera] diamond 321 89.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Astrephomenaceae Astrephomene Astrephomene gubernaculifera
31875442 31875442 PRJNA188516_P_NODE_4457_length_168_cov_0.873950_g4407_i0 PRJNA188516 4457 168 0.87395 1.468236 Monoraphidium minutum 39955 Plants Plants 82.8 2.76e-17   NR KAI8470704.1 39955 g4407 i0 72.2 4.82142857142857 54 15 96.4 0 166 5 76 129 KAI8470704.1 MAG: ribosomal protein S2, flavodoxin-like domain-containing protein [Monoraphidium minutum] diamond 810 82.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium minutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;