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contig_metadata

24 rows where bioproject = "PRJNA188516", tax_clade = "Opisthokonta" and tax_phylum = "Chordata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chordata · 24 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 24 ✖

bioproject 1

  • PRJNA188516 · 24 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1640585 1640585 PRJNA188516_P_NODE_4102_length_169_cov_0.866667_g4052_i0 PRJNA188516 4102 169 0.866667 1.46466723 Sitta europaea 50251 Chordata Chordata 52.8 0.014   NTclustered gi|2917598300|emb|OZ228662.1| 50251 g4052 i0 100 0.331360946745562 28 0 17 0 6 33 27061412 27061385 Sitta europaea genome assembly, chromosome: 8 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Sittidae Sitta Sitta europaea
2916488 2916488 PRJNA188516_P_NODE_4583_length_167_cov_0.881356_g4533_i0 PRJNA188516 4583 167 0.881356 1.47186452 Anser cygnoides 8845 Chordata Chordata 80.5 6.43e-11   NTclustered gi|2782202122|ref|XM_048057220.2| 8845 g4533 i0 88.06 4.94011976047904 67 8 40 0 2 68 319 253 PREDICTED: Anser cygnoides ribosomal protein S14 (RPS14), mRNA blastn 825 80.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anser Anser cygnoides
3605663 3605663 PRJNA188516_P_NODE_5563_length_164_cov_0.904348_g5513_i0 PRJNA188516 5563 164 0.904348 1.48313072 Metazoa 33208 Chordata Chordata 154 3.65e-33   NTclustered gi|2562894275|ref|XM_058858150.1| 48891 g5513 i0 84.277 91.140243902439 159 23 96 2 7 164 335 178 PREDICTED: Poecile atricapillus ribosomal protein L23 (RPL23), mRNA blastn 14947 154 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Paridae Poecile Poecile atricapillus
5469164 5469164 PRJNA188516_P_NODE_5205_length_165_cov_0.896552_g5155_i0 PRJNA188516 5205 165 0.896552 1.4793108 Bos indicus 9915 Chordata Chordata 178 2.18e-40   NTclustered gi|2878369567|ref|XR_011569285.1| 9915 g5155 i0 93.388 212.557575757576 121 6 72 2 47 165 5201 5081 PREDICTED: Bos indicus uncharacterized lncRNA (LOC109566173), ncRNA blastn 35072 178 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos indicus
9293916 9293916 PRJNA188516_P_NODE_5248_length_165_cov_0.896552_g5198_i0 PRJNA188516 5248 165 0.896552 1.4793108 Mus musculus 10090 Chordata Chordata 305 9.59e-79   NTclustered gi|26082301|dbj|AK031387.1| 10090 g5198 i0 100 108.333333333333 165 0 100 0 1 165 2112 2276 Mus musculus 13 days embryo male testis cDNA, RIKEN full-length enriched library, clone:6030421A03 product:U3B small nuclear RNA 4, full insert sequence blastn 17875 305 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
9293923 9293923 PRJNA188516_P_NODE_588_length_513_cov_201.730603_g538_i0 PRJNA188516 588 513 201.730603 1034.87799339 Mus musculus 10090 Chordata Chordata 922 0   NTclustered gi|13517973|gb|AF346627.1|AF346627 10090 g538 i0 100 97.3898635477583 499 0 97 0 14 512 182 680 Mus musculus epithelial membrane protein 2 (Emp2) mRNA, complete cds blastn 49961 922 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
9293940 9293940 PRJNA188516_P_NODE_948_length_391_cov_1.786550_g898_i0 PRJNA188516 948 391 1.78655 6.9854105 Mus musculus 10090 Chordata Chordata 593 4.949999999999998e-165   NTclustered gi|2548330513|gb|OQ915115.1| 10090 g898 i0 94.192 81.1764705882353 396 11 100 9 1 391 4680 5068 Mus musculus clone BAC JH_40 45S ribosomal RNA and 18S ribosomal RNA genes, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, 28S ribosomal RNA gene, 3' and 5' external transcribed spacers, complete sequence; and 18S ribosomal RNA gene, partial sequence blastn 31740 593 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
10569907 10569907 PRJNA188516_P_NODE_5409_length_164_cov_0.904348_g5359_i0 PRJNA188516 5409 164 0.904348 1.48313072 Myotis daubentonii 98922 Chordata Chordata 75 2.92e-9   NTclustered gi|2579778429|ref|XR_009449993.1| 98922 g5359 i0 84.81 15.8231707317073 79 7 46 4 1 76 16 92 PREDICTED: Myotis daubentonii U2 spliceosomal RNA (LOC132221445), ncRNA blastn 2595 75 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Myotis Myotis daubentonii
11844399 11844399 PRJNA188516_P_NODE_5410_length_164_cov_0.904348_g5360_i0 PRJNA188516 5410 164 0.904348 1.48313072 Cavia porcellus 10141 Chordata Chordata 303 3.42e-78   NTclustered gi|2687740325|ref|XM_005005322.4| 10141 g5360 i0 100 97.640243902439 164 0 100 0 1 164 843 680 PREDICTED: Cavia porcellus prosaposin (Psap), transcript variant X4, mRNA blastn 16013 303 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Caviidae Cavia Cavia porcellus
13119614 13119614 PRJNA188516_P_NODE_5131_length_165_cov_0.896552_g5081_i0 PRJNA188516 5131 165 0.896552 1.4793108 Sus scrofa 9823 Chordata Chordata 137 3.7e-28   NTclustered gi|237945933|emb|CU207382.5| 9823 g5081 i0 98.701 59.7575757575758 77 1 47 0 89 165 52421 52497 Pig DNA sequence from clone CH242-409K13 on chromosome X, complete sequence blastn 9860 137 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
14394933 14394933 PRJNA188516_P_NODE_6112_length_162_cov_0.920354_g6062_i0 PRJNA188516 6112 162 0.920354 1.49097348 Xenopus tropicalis 8364 Chordata Chordata 283 4.39e-72   NTclustered gi|51895800|gb|BC080974.1| 8364 g6062 i0 98.148 99.8888888888889 162 3 100 0 1 162 1211 1050 Xenopus tropicalis hypothetical LOC493206, mRNA (cDNA clone IMAGE:6984500), partial cds blastn 16182 283 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
15668593 15668593 PRJNA188516_P_NODE_3173_length_191_cov_1.443662_g3123_i0 PRJNA188516 3173 191 1.443662 2.75739442 Mus musculus 10090 Chordata Chordata 315 1.9e-81   NTclustered gi|74190022|dbj|AK141268.1| 10090 g3123 i0 100 31.4764397905759 170 0 89 0 1 170 348 179 Mus musculus 7 days embryo whole body cDNA, RIKEN full-length enriched library, clone:C430011C24 product:tumor necrosis factor (ligand) superfamily, member 6, full insert sequence blastn 6012 315 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
22731951 22731951 PRJNA188516_P_NODE_1638_length_279_cov_0.900000_g1588_i0 PRJNA188516 1638 279 0.9 2.511 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 114 2e-29   NR OCT94035.1 8355 g1588 i0 71.4 105.043010752688 77 22 82.8 0 49 279 108 184 OCT94035.1 hypothetical protein XELAEV_18011698mg [Xenopus laevis] diamond 29307 115 0.991304347826087 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
22731959 22731959 PRJNA188516_P_NODE_3958_length_170_cov_1.231405_g3908_i0 PRJNA188516 3958 170 1.231405 2.0933885 Apteryx 8821 Chordata Chordata 147 6.339999999999999e-31   NTclustered gi|1444534300|ref|XM_026088147.1| 308060 g3908 i0 82.738 7.47647058823529 168 25 98 2 4 169 533 698 PREDICTED: Apteryx rowi casein kinase II subunit alpha-like (LOC112976673), transcript variant X1, mRNA blastn 1271 147 1 Eukaryota Opisthokonta Metazoa Chordata Aves Apterygiformes Apterygidae Apteryx Apteryx rowi
26743182 26743182 PRJNA188516_P_NODE_3201_length_190_cov_1.475177_g3151_i0 PRJNA188516 3201 190 1.475177 2.8028363 Artiodactyla 91561 Chordata Chordata 80.5 8.87e-16   NR TKC36767.1 40151 g3151 i0 66.1 8.30526315789474 62 21 97.9 0 3 188 732 793 TKC36767.1 hypothetical protein EI555_004718, partial [Monodon monoceros] diamond 1578 80.9 0.995055624227441 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Monodontidae Monodon Monodon monoceros
26915717 26915717 PRJNA188516_P_NODE_5802_length_163_cov_0.912281_g5752_i0 PRJNA188516 5802 163 0.912281 1.48701803 Bufotes viridis 30338 Chordata Chordata 44.7 0.00268   NR CAK8639140.1 30338 g5752 i0 53.7 1.50920245398773 41 19 75.5 0 1 123 522 562 CAK8639140.1 B-cell lymphoma 6 protein homolog [Bufotes viridis] diamond 246 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
27706150 27706150 PRJNA188516_P_NODE_2564_length_214_cov_1.260606_g2514_i0 PRJNA188516 2564 214 1.260606 2.69769684 Lepidochelys olivacea 27788 Chordata Chordata 59.3 3.49e-8   NR CAJ90462.1 27788 g2514 i0 44.9 7.80841121495327 69 38 96.7 0 212 6 261 329 CAJ90462.1 NADH dehydrogenase subunit 4 [Lepidochelys olivacea] diamond 1671 59.7 0.993299832495812 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Lepidochelys Lepidochelys olivacea
28179105 28179105 PRJNA188516_P_NODE_6066_length_162_cov_0.920354_g6016_i0 PRJNA188516 6066 162 0.920354 1.49097348 Taeniopygia guttata 59729 Chordata Chordata 39.7 0.0355   NR ACH44493.1 59729 g6016 i0 58.8 0.62962962962963 34 11 57.4 1 147 55 7 40 ACH44493.1 putative inosine triphosphatase isoform variant 2 [Taeniopygia guttata] diamond 102 39.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Estrildidae Taeniopygia Taeniopygia guttata
29852881 29852881 PRJNA188516_P_NODE_3791_length_174_cov_0.832000_g3741_i0 PRJNA188516 3791 174 0.832 1.44768 Engystomops pustulosus 76066 Chordata Chordata 41.6 0.0107   NR KAG8554186.1 76066 g3741 i0 71.4 1.44827586206897 28 8 48.3 0 167 84 73 100 KAG8554186.1 hypothetical protein GDO81_003707 [Engystomops pustulosus] diamond 252 41.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
30628639 30628639 PRJNA188516_P_NODE_1633_length_279_cov_2.143478_g1583_i0 PRJNA188516 1633 279 2.143478 5.98030362 Chordata 7711 Chordata Chordata 42.4 0.0295   NR CAK8685383.1 159417 g1583 i0 52.5 1.33333333333333 40 19 43 0 189 70 60 99 CAK8685383.1 unnamed protein product [Clavelina lepadiformis] diamond 372 42.4 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Aplousobranchia Clavelinidae Clavelina Clavelina lepadiformis
31116345 31116345 PRJNA188516_P_NODE_5775_length_163_cov_0.912281_g5725_i0 PRJNA188516 5775 163 0.912281 1.48701803 Oreolalax omeimontis 445777 Chordata Chordata 57.8 5.84e-8   NR WDD39345.1 445777 g5725 i0 66.7 7.95092024539877 54 18 99.4 0 163 2 105 158 WDD39345.1 NADH dehydrogenase subunit 1 [Oreolalax omeimontis] diamond 1296 57.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Megophryidae Oreolalax Oreolalax omeimontis
31369763 31369763 PRJNA188516_P_NODE_6056_length_162_cov_0.920354_g6006_i0 PRJNA188516 6056 162 0.920354 1.49097348 Polypterus senegalus 55291 Chordata Chordata 75.1 3.19e-14   NR KAG2460242.1 55291 g6006 i0 60.4 0.981481481481482 53 21 98.1 0 3 161 231 283 KAG2460242.1 TCB1 transposase, partial [Polypterus senegalus] diamond 159 75.1 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
31559495 31559495 PRJNA188516_P_NODE_6196_length_159_cov_3.809091_g6146_i0 PRJNA188516 6196 159 3.809091 6.05645469 Cavia porcellus 10141 Chordata Chordata 41.2 0.0392   NR XP_003470245.2 10141 g6146 i0 83.3 1.43396226415094 24 4 45.3 0 88 159 69 92 XP_003470245.2 eukaryotic translation initiation factor 1A, X-chromosomal-like [Cavia porcellus] diamond 228 41.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Caviidae Cavia Cavia porcellus
32558149 32558149 PRJNA188516_P_NODE_6119_length_162_cov_0.920354_g6069_i0 PRJNA188516 6119 162 0.920354 1.49097348 Metazoa 33208 Chordata Chordata 60.1 7.4e-10   NR KAG8520360.1 202257 g6069 i0 63 59.037037037037 54 18 100 1 162 1 10 61 KAG8520360.1 60S ribosomal protein L27 [Galemys pyrenaicus] diamond 9564 60.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Talpidae Galemys Galemys pyrenaicus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;