RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA188516", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA188516 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9293930 9293930 PRJNA188516_P_NODE_6128_length_162_cov_0.920354_g6078_i0 PRJNA188516 6128 162 0.920354 1.49097348 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 156 9.99e-34   NTclustered gi|575456455|gb|CP007128.1| 861299 g6078 i0 89.516 67.8518518518518 124 11 77 2 38 161 3042440 3042319 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 10992 156 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
15668621 15668621 PRJNA188516_P_NODE_4913_length_166_cov_0.888889_g4863_i0 PRJNA188516 4913 166 0.888889 1.47555574 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 185 1.3099999999999999e-42   NTclustered gi|2874253728|emb|OY969570.1| 412054 g4863 i0 87.059 41.4638554216867 170 15 100 7 1 166 2958279 2958113 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 6883 185 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
29032096 29032096 PRJNA188516_P_NODE_6208_length_158_cov_2.376147_g6158_i0 PRJNA188516 6208 158 2.376147 3.75431226 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 41.2 0.04   NR MEJ2677623.1 2026742 g6158 i0 46 0.949367088607595 50 27 94.9 0 9 158 33 82 MEJ2677623.1 hypothetical protein [Gemmatimonadota bacterium] diamond 150 41.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32287248 32287248 PRJNA188516_P_NODE_2459_length_219_cov_1.088235_g2409_i0 PRJNA188516 2459 219 1.088235 2.38323465 Longimicrobium sp. 2029185 Bacteria Bacteria 42.4 0.0363   NR HEX8690944.1 2029185 g2409 i0 34.9 0.863013698630137 63 33 86.3 2 212 24 111 165 HEX8690944.1 sialidase family protein [Longimicrobium sp.] diamond 189 42.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;