RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA188516", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA188516 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9293849 9293849 PRJNA188516_P_NODE_1668_length_276_cov_0.938326_g1618_i0 PRJNA188516 1668 276 0.938326 2.58977976 Paramoeba branchiphila 308475 Discosea other_Eukaryota 313 1.05e-80   NTclustered gi|226347442|gb|FJ807261.1| 308475 g1618 i0 87.319 100.79347826087 276 31 99 4 1 274 738 1011 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 27819 313 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
9983230 9983230 PRJNA188516_P_NODE_1768_length_265_cov_0.976852_g1718_i0 PRJNA188516 1768 265 0.976852 2.5886578 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 92 6.16e-20   NR BBJ29173.1 5755 g1718 i0 50.6 13.177358490566 89 43 99.6 1 2 265 166 254 BBJ29173.1 cysteine proteinase 5 [Acanthamoeba castellanii] diamond 3492 92 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
10569871 10569871 PRJNA188516_P_NODE_3689_length_176_cov_1.228346_g3639_i0 PRJNA188516 3689 176 1.228346 2.16188896 Thecamoeba sp. JRG-2011 1078868 Discosea other_Eukaryota 248 1.7599999999999998e-61   NTclustered gi|345452609|gb|JF694323.1| 1078868 g3639 i0 92.045 98.4772727272727 176 14 100 0 1 176 161 336 Thecamoeba sp. JRG-2011 strain ATCC 50185 clone 1 actin gene, partial cds blastn 17332 248 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba sp. JRG-2011
26725344 26725344 PRJNA188516_P_NODE_5361_length_164_cov_0.904348_g5311_i0 PRJNA188516 5361 164 0.904348 1.48313072 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 60.1 9.64e-9   NR AGC82269.1 5755 g5311 i0 53.5 0.786585365853659 43 20 78.7 0 162 34 94 136 AGC82269.1 cAMP phosphodiesterase [Acanthamoeba castellanii] diamond 129 60.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28702469 28702469 PRJNA188516_P_NODE_4907_length_166_cov_0.888889_g4857_i0 PRJNA188516 4907 166 0.888889 1.47555574 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 87.4 1.53e-18   NR ACO50132.1 308475 g4857 i0 67.9 5.56626506024096 53 17 95.8 0 164 6 158 210 ACO50132.1 elongation factor 1 alpha, partial [Paramoeba branchiphila] diamond 924 87.4 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
29316025 29316025 PRJNA188516_P_NODE_5369_length_164_cov_0.904348_g5319_i0 PRJNA188516 5369 164 0.904348 1.48313072 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 42 0.0243   NR XP_004339741.1 1257118 g5319 i0 42.3 0.951219512195122 52 28 95.1 1 159 4 21 70 XP_004339741.1 Armadillo/betacatenin-like repeat domain containing protein [Acanthamoeba castellanii str. Neff] diamond 156 42 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;