RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

20 rows where bioproject = "PRJNA188516" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 3

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 20 ✖

bioproject 1

  • PRJNA188516 · 20 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5469136 5469136 PRJNA188516_P_NODE_3305_length_187_cov_1.311594_g3255_i0 PRJNA188516 3305 187 1.311594 2.45268078 Stemonaria longa 1258717 Evosea other_Eukaryota 152 1.5299999999999998e-32   NTclustered gi|2714663874|gb|OR759949.1| 1258717 g3255 i0 89.256 68.0106951871658 121 13 65 0 67 187 589 469 Stemonaria longa translation elongation factor EF-1 subunit alpha (EF1A) gene, partial cds blastn 12718 152 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Stemonitida Stemonitidae Stemonaria Stemonaria longa
9293849 9293849 PRJNA188516_P_NODE_1668_length_276_cov_0.938326_g1618_i0 PRJNA188516 1668 276 0.938326 2.58977976 Paramoeba branchiphila 308475 Discosea other_Eukaryota 313 1.05e-80   NTclustered gi|226347442|gb|FJ807261.1| 308475 g1618 i0 87.319 100.79347826087 276 31 99 4 1 274 738 1011 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 27819 313 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
9983230 9983230 PRJNA188516_P_NODE_1768_length_265_cov_0.976852_g1718_i0 PRJNA188516 1768 265 0.976852 2.5886578 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 92 6.16e-20   NR BBJ29173.1 5755 g1718 i0 50.6 13.177358490566 89 43 99.6 1 2 265 166 254 BBJ29173.1 cysteine proteinase 5 [Acanthamoeba castellanii] diamond 3492 92 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
10569871 10569871 PRJNA188516_P_NODE_3689_length_176_cov_1.228346_g3639_i0 PRJNA188516 3689 176 1.228346 2.16188896 Thecamoeba sp. JRG-2011 1078868 Discosea other_Eukaryota 248 1.7599999999999998e-61   NTclustered gi|345452609|gb|JF694323.1| 1078868 g3639 i0 92.045 98.4772727272727 176 14 100 0 1 176 161 336 Thecamoeba sp. JRG-2011 strain ATCC 50185 clone 1 actin gene, partial cds blastn 17332 248 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba sp. JRG-2011
10569906 10569906 PRJNA188516_P_NODE_5389_length_164_cov_0.904348_g5339_i0 PRJNA188516 5389 164 0.904348 1.48313072 Arcyria cinerea 137621 Evosea other_Eukaryota 198 1.66e-46   NTclustered gi|2772191589|gb|PQ014972.1| 137621 g5339 i0 91.608 68 143 12 87 0 15 157 126 268 Arcyria cinerea voucher sc32852 translation elongation factor 1-alpha (EF1a) gene, partial cds blastn 11152 198 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Trichiidae Arcyria Arcyria cinerea
13119558 13119558 PRJNA188516_P_NODE_2391_length_222_cov_1.335260_g2341_i0 PRJNA188516 2391 222 1.33526 2.9642772 Rhizamoeba sp. ATCC 50933 497999 Tubulinea other_Eukaryota 233 6.549999999999999e-57   NTclustered gi|167859754|gb|EU273459.1| 497999 g2341 i0 85.778 92.4864864864865 225 26 100 6 1 222 515 294 Rhizamoeba sp. ATCC 50933 actin gene, partial cds blastn 20532 233 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba sp. ATCC 50933
14394861 14394861 PRJNA188516_P_NODE_2032_length_243_cov_1.072165_g1982_i0 PRJNA188516 2032 243 1.072165 2.60536095 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 90.1 9.61e-22   NR PRP81011.1 1890364 g1982 i0 77.4 3.12345679012346 62 13 76.5 1 26 211 9 69 PRP81011.1 40S ribosomal protein S28 [Planoprotostelium fungivorum] diamond 759 90.1 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
15668576 15668576 PRJNA188516_P_NODE_2373_length_223_cov_1.086207_g2323_i0 PRJNA188516 2373 223 1.086207 2.42224161 Acytostelium subglobosum 361139 Evosea other_Eukaryota 99 2.51e-16   NTclustered gi|831770523|ref|XM_012897573.1| 1410327 g2323 i0 88.889 1.00896860986547 81 7 36 2 43 122 431 352 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 225 99 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
19491776 19491776 PRJNA188516_P_NODE_2476_length_218_cov_1.230769_g2426_i0 PRJNA188516 2476 218 1.230769 2.68307642 Glaeseria mira 242547 Tubulinea other_Eukaryota 121 5.209999999999999e-23   NTclustered gi|33946352|gb|AY294155.1| 242547 g2426 i0 80.921 14.5412844036697 152 29 70 0 2 153 202 51 Glaeseria mira actin mRNA, partial cds blastn 3170 121 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Glaeseria Glaeseria mira
22042467 22042467 PRJNA188516_P_NODE_5798_length_163_cov_0.912281_g5748_i0 PRJNA188516 5798 163 0.912281 1.48701803 Acytostelium subglobosum 361139 Evosea other_Eukaryota 147 6.0599999999999996e-31   NTclustered gi|831760979|ref|XM_012894664.1| 1410327 g5748 i0 84.106 37.8036809815951 151 24 93 0 1 151 195 345 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 6162 147 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
26662125 26662125 PRJNA188516_P_NODE_6061_length_162_cov_0.920354_g6011_i0 PRJNA188516 6061 162 0.920354 1.49097348 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 79 2.18e-15   NR KAH3764675.1 1580589 g6011 i0 57.1 1.03703703703704 56 21 98.1 1 159 1 660 715 KAH3764675.1 e3 ubiquitin-protein ligase [Pelomyxa schiedti] diamond 168 79 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
26725344 26725344 PRJNA188516_P_NODE_5361_length_164_cov_0.904348_g5311_i0 PRJNA188516 5361 164 0.904348 1.48313072 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 60.1 9.64e-9   NR AGC82269.1 5755 g5311 i0 53.5 0.786585365853659 43 20 78.7 0 162 34 94 136 AGC82269.1 cAMP phosphodiesterase [Acanthamoeba castellanii] diamond 129 60.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28702469 28702469 PRJNA188516_P_NODE_4907_length_166_cov_0.888889_g4857_i0 PRJNA188516 4907 166 0.888889 1.47555574 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 87.4 1.53e-18   NR ACO50132.1 308475 g4857 i0 67.9 5.56626506024096 53 17 95.8 0 164 6 158 210 ACO50132.1 elongation factor 1 alpha, partial [Paramoeba branchiphila] diamond 924 87.4 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
28860098 28860098 PRJNA188516_P_NODE_5828_length_163_cov_0.912281_g5778_i0 PRJNA188516 5828 163 0.912281 1.48701803 Eumycetozoa 142796 Evosea other_Eukaryota 60.5 6.77e-9   NR KAF2073298.1 133409 g5778 i0 51.9 1.87730061349693 52 25 95.7 0 161 6 491 542 KAF2073298.1 hypothetical protein CYY_005397 [Polysphondylium violaceum] diamond 306 60.8 0.995065789473684 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
29095138 29095138 PRJNA188516_P_NODE_5568_length_164_cov_0.886957_g5518_i0 PRJNA188516 5568 164 0.886957 1.45460948 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 68.9 7.32e-12   NR PRP80802.1 1890364 g5518 i0 60.8 1.86585365853659 51 20 93.3 0 160 8 263 313 PRP80802.1 clathrin heavy chain, partial [Planoprotostelium fungivorum] diamond 306 68.9 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
29316025 29316025 PRJNA188516_P_NODE_5369_length_164_cov_0.904348_g5319_i0 PRJNA188516 5369 164 0.904348 1.48313072 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 42 0.0243   NR XP_004339741.1 1257118 g5319 i0 42.3 0.951219512195122 52 28 95.1 1 159 4 21 70 XP_004339741.1 Armadillo/betacatenin-like repeat domain containing protein [Acanthamoeba castellanii str. Neff] diamond 156 42 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30295520 30295520 PRJNA188516_P_NODE_2992_length_197_cov_2.527027_g2942_i0 PRJNA188516 2992 197 2.527027 4.97824319 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 76.6 1.96e-14   NR PRP77394.1 1890364 g2942 i0 44.6 0.989847715736041 65 36 99 0 196 2 300 364 PRP77394.1 hypothetical protein PROFUN_14400 [Planoprotostelium fungivorum] diamond 195 76.6 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
31748946 31748946 PRJNA188516_P_NODE_5177_length_165_cov_0.896552_g5127_i0 PRJNA188516 5177 165 0.896552 1.4793108 Amoeba proteus 5775 Tubulinea other_Eukaryota 99.4 5.96e-23   NR AAP88974.1 5775 g5127 i0 87 4.98181818181818 54 7 98.2 0 162 1 11 64 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 822 99.4 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
32019999 32019999 PRJNA188516_P_NODE_5358_length_164_cov_0.904348_g5308_i0 PRJNA188516 5358 164 0.904348 1.48313072 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 66.2 6.5e-11   NR XP_020428166.1 670386 g5308 i0 55.6 8.76219512195122 54 24 98.8 0 163 2 458 511 XP_020428166.1 pleckstrin domain-containing protein [Heterostelium album PN500] diamond 1437 66.6 0.993993993993994 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
32381920 32381920 PRJNA188516_P_NODE_4739_length_167_cov_0.881356_g4689_i0 PRJNA188516 4739 167 0.881356 1.47186452 Polysphondylium violaceum 133409 Evosea other_Eukaryota 54.7 8.11e-7   NR KAF2078218.1 133409 g4689 i0 54.2 1.72455089820359 48 21 84.4 1 25 165 1172 1219 KAF2078218.1 hypothetical protein CYY_000508 [Polysphondylium violaceum] diamond 288 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;