RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA177642" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA177642 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27755381 27755381 PRJNA177642_P_NODE_5084_length_640_cov_1.957447_g4034_i0 PRJNA177642 5084 640 1.957447 12.5276608 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 128 7.77e-32   NR TMW60079.1 41045 g4034 i0 33.3 9.9796875 225 128 97.5 3 634 11 1 220 TMW60079.1 hypothetical protein Poli38472_000121 [Pythium oligandrum] diamond 6387 129 0.992248062015504 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
30769121 30769121 PRJNA177642_P_NODE_16354_length_173_cov_1.000000_g15129_i0 PRJNA177642 16354 173 1 1.73 Thraustotheca clavata 74557 SAR_Eukaryotes SAR_Eukaryotes 68.2 1.56e-11   NR OQS02928.1 74557 g15129 i0 63.6 2.86127167630058 55 20 95.4 0 173 9 1007 1061 OQS02928.1 hypothetical protein THRCLA_04746 [Thraustotheca clavata] diamond 495 68.2 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
32508675 32508675 PRJNA177642_P_NODE_3999_length_749_cov_2.220833_g3062_i0 PRJNA177642 3999 749 2.220833 16.63403917 Aphanomyces cochlioides 112091 SAR_Eukaryotes SAR_Eukaryotes 50.4 0.00252   NR KAG9408400.1 112091 g3062 i0 41.5 0.260347129506008 65 34 24.8 2 210 25 86 149 KAG9408400.1 hypothetical protein AC1031_021638 [Aphanomyces cochlioides] diamond 195 50.4 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces cochlioides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;