RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA177642" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA177642 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4192613 4192613 PRJNA177642_P_NODE_18124_length_164_cov_1.051852_g16899_i0 PRJNA177642 18124 164 1.051852 1.72503728 Bacteria 2 Bacteria Bacteria 100 1.3799999999999998e-23   NR PYO67931.1 2026742 g16899 i0 90.6 3.93292682926829 53 5 97 0 163 5 228 280 PYO67931.1 MAG: threonine synthase [Gemmatimonadota bacterium] diamond 645 100 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
10569522 10569522 PRJNA177642_P_NODE_15769_length_181_cov_1.684211_g14544_i0 PRJNA177642 15769 181 1.684211 3.04842191 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 115 2.8e-30   NR MBI1968209.1 2026742 g14544 i0 86.7 0.994475138121547 60 8 99.4 0 1 180 48 107 MBI1968209.1 GTP cyclohydrolase I FolE [Gemmatimonadota bacterium] diamond 180 115 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
15668322 15668322 PRJNA177642_P_NODE_17213_length_168_cov_1.028777_g15988_i0 PRJNA177642 17213 168 1.028777 1.72834536 Gemmatimonas phototrophica 1379270 Bacteria Bacteria 213 6.12e-51   NTclustered gi|1015602748|gb|CP011454.1| 1379270 g15988 i0 89.759 39.1011904761905 166 17 99 0 3 168 2077406 2077571 Gemmatimonas phototrophica strain AP64, complete genome blastn 6569 213 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas phototrophica
26662114 26662114 PRJNA177642_P_NODE_16841_length_170_cov_1.000000_g15616_i0 PRJNA177642 16841 170 1 1.7 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 84.7 2.16e-17   NR HYT70906.1 2448054 g15616 i0 74.5 6.74117647058824 55 14 97.1 0 4 168 118 172 HYT70906.1 OmpA family protein [Gemmatimonadales bacterium] diamond 1146 84.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
27912773 27912773 PRJNA177642_P_NODE_17465_length_167_cov_1.007246_g16240_i0 PRJNA177642 17465 167 1.007246 1.68210082 Bacteria 2 Bacteria Bacteria 92.8 3.06e-20   NR PYP53242.1 2026742 g16240 i0 78.2 4.94011976047904 55 12 98.8 0 2 166 624 678 PYP53242.1 MAG: SusC/RagA family TonB-linked outer membrane protein [Gemmatimonadota bacterium] diamond 825 92.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28779128 28779128 PRJNA177642_P_NODE_18427_length_163_cov_1.029851_g17202_i0 PRJNA177642 18427 163 1.029851 1.67865713 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 95.1 2.5900000000000003e-21   NR MBA3759617.1 2448054 g17202 i0 81.1 11.6503067484663 53 10 97.5 0 160 2 135 187 MBA3759617.1 hypothetical protein [Gemmatimonadales bacterium] diamond 1899 95.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30168529 30168529 PRJNA177642_P_NODE_17512_length_166_cov_2.036496_g16287_i0 PRJNA177642 17512 166 2.036496 3.38058336 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 91.7 7.44e-20   NR HEY9383919.1 2448054 g16287 i0 83.3 4.87951807228916 54 9 97.6 0 3 164 177 230 HEY9383919.1 tetratricopeptide repeat protein [Gemmatimonadales bacterium] diamond 810 91.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30534008 30534008 PRJNA177642_P_NODE_17233_length_168_cov_1.014388_g16008_i0 PRJNA177642 17233 168 1.014388 1.70417184 Bacteria 2 Bacteria Bacteria 99 6.68e-24   NR OLC03323.1 1805196 g16008 i0 89.1 2.94642857142857 55 6 98.2 0 2 166 88 142 OLC03323.1 MAG: hypothetical protein AUH45_06265 [Gemmatimonadetes bacterium 13_1_40CM_69_22] diamond 495 99 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadetes bacterium 13_1_40CM_69_22

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;