RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA177642", tax_phylum = "Chloroflexota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 6 ✖

tax_phylum 1

  • Chloroflexota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA177642 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2916189 2916189 PRJNA177642_P_NODE_18443_length_163_cov_1.014925_g17218_i0 PRJNA177642 18443 163 1.014925 1.65432775 FCB group 1783270 Bacteria Bacteria 78.6 1.07e-16   NR TMC67734.1 2026724 g17218 i0 97.5 21.6993865030675 40 1 73.6 0 42 161 27 66 TMC67734.1 MAG: IMP dehydrogenase, partial [Chloroflexota bacterium] diamond 3537 78.6 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
4192611 4192611 PRJNA177642_P_NODE_17944_length_165_cov_1.029412_g16719_i0 PRJNA177642 17944 165 1.029412 1.6985298 Chloroflexota bacterium 2026724 Bacteria Bacteria 84 3.41e-17   NR HEX2034575.1 2026724 g16719 i0 79.2 0.963636363636364 53 11 96.4 0 3 161 187 239 HEX2034575.1 dihydropteroate synthase [Chloroflexota bacterium] diamond 159 84 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
11843975 11843975 PRJNA177642_P_NODE_12970_length_286_cov_1.743191_g11745_i0 PRJNA177642 12970 286 1.743191 4.98552626 uncultured Dehalococcoidia bacterium 498747 Bacteria Bacteria 54.7 0.007   NTclustered gi|2518540574|emb|OX638292.1| 498747 g11745 i0 96.875 0.111888111888112 32 1 11 0 34 65 1105005 1104974 MAG: uncultured Dehalococcoidia bacterium isolate 695a8b18-9d85-47ae-89af-9793d4c73328 genome assembly, chromosome: 1 blastn 32 54.7 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       uncultured Dehalococcoidia bacterium
24591762 24591762 PRJNA177642_P_NODE_17660_length_166_cov_1.036496_g16435_i0 PRJNA177642 17660 166 1.036496 1.72058336 Chloroflexota bacterium 2026724 Bacteria Bacteria 110 8.300000000000001e-27   NR MPZ14586.1 2026724 g16435 i0 92.7 1.98795180722892 55 4 99.4 0 2 166 138 192 MPZ14586.1 FAD-binding protein [Chloroflexota bacterium] diamond 330 110 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
28323306 28323306 PRJNA177642_P_NODE_17426_length_167_cov_1.021739_g16201_i0 PRJNA177642 17426 167 1.021739 1.70630413 Bacteria 2 Bacteria Bacteria 82.4 1.09e-17   NR MDQ3128336.1 2026724 g16201 i0 72.5 1.83233532934132 51 14 91.6 0 156 4 47 97 MDQ3128336.1 class I SAM-dependent methyltransferase [Chloroflexota bacterium] diamond 306 82.4 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
28526876 28526876 PRJNA177642_P_NODE_17407_length_167_cov_1.028986_g16182_i0 PRJNA177642 17407 167 1.028986 1.71840662 Chloroflexota bacterium 2026724 Bacteria Bacteria 43.9 0.0052   NR TMG72006.1 2026724 g16182 i0 55.6 1.47305389221557 36 16 64.7 0 3 110 188 223 TMG72006.1 MAG: pyridoxal-phosphate dependent enzyme [Chloroflexota bacterium] diamond 246 43.9 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;