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contig_metadata

10 rows where bioproject = "PRJNA177642", tax_kingdom = "Metazoa" and tax_phylum = "Chordata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chordata · 10 ✖

tax_kingdom 1

  • Metazoa · 10 ✖

tax_clade 1

bioproject 1

  • PRJNA177642 · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5468766 5468766 PRJNA177642_P_NODE_14205_length_218_cov_2.724868_g12980_i0 PRJNA177642 14205 218 2.724868 5.94021224 Charadrius vociferus 50402 Chordata Chordata 375 1.0099999999999998e-99   NTclustered gi|699667904|ref|XM_009885697.1| 50402 g12980 i0 97.706 35.848623853211 218 5 100 0 1 218 262 45 PREDICTED: Charadrius vociferus uncharacterized LOC104287046 (LOC104287046), partial mRNA blastn 7815 375 1 Eukaryota Opisthokonta Metazoa Chordata Aves Charadriiformes Charadriidae Charadrius Charadrius vociferus
9293555 9293555 PRJNA177642_P_NODE_16668_length_170_cov_2.886525_g15443_i0 PRJNA177642 16668 170 2.886525 4.9070925 Gallus gallus 9031 Chordata Chordata 305 9.88e-79   NTclustered gi|2201664513|ref|XM_040653867.2| 9031 g15443 i0 99.405 12.5294117647059 168 1 99 0 2 169 275 108 PREDICTED: Gallus gallus zinc finger protein 501-like (LOC121107770), mRNA blastn 2130 305 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
11844045 11844045 PRJNA177642_P_NODE_16930_length_169_cov_1.128571_g15705_i0 PRJNA177642 16930 169 1.128571 1.90728499 Sus scrofa 9823 Chordata Chordata 219 1.3099999999999999e-52   NTclustered gi|165931778|emb|AM932505.1| 9823 g15705 i0 90 21.112426035503 170 15 100 2 1 169 62 230 Sus scrofa centromeric satellite repeat, clone Pg3 blastn 3568 219 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
11844058 11844058 PRJNA177642_P_NODE_17530_length_166_cov_1.810219_g16305_i0 PRJNA177642 17530 166 1.810219 3.00496354 Charadrius vociferus 50402 Chordata Chordata 265 1.64e-66   NTclustered gi|699695430|ref|XM_009891680.1| 50402 g16305 i0 95.758 6.8855421686747 165 6 99 1 1 164 998 1162 PREDICTED: Charadrius vociferus uncharacterized LOC104292323 (LOC104292323), partial mRNA blastn 1143 265 1 Eukaryota Opisthokonta Metazoa Chordata Aves Charadriiformes Charadriidae Charadrius Charadrius vociferus
13119196 13119196 PRJNA177642_P_NODE_13011_length_283_cov_1.122047_g11786_i0 PRJNA177642 13011 283 1.122047 3.17539301 Charadrius vociferus 50402 Chordata Chordata 444 3.69e-120   NTclustered gi|699656164|ref|XM_009883139.1| 50402 g11786 i0 95.053 25.8268551236749 283 13 99 1 2 283 1806 2088 PREDICTED: Charadrius vociferus uncharacterized LOC104284769 (LOC104284769), mRNA blastn 7309 444 1 Eukaryota Opisthokonta Metazoa Chordata Aves Charadriiformes Charadriidae Charadrius Charadrius vociferus
16357532 16357532 PRJNA177642_P_NODE_16973_length_169_cov_1.028571_g15748_i0 PRJNA177642 16973 169 1.028571 1.73828499 Bubalus 9918 Chordata Chordata 313 5.859999999999999e-81   NTclustered gi|1904695191|gb|MT942706.1| 89462 g15748 i0 100 100 169 0 100 0 1 169 13420 13588 Bubalus bubalis isolate H18 mitochondrion, complete genome blastn 16900 313 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bubalus Bubalus bubalis
26775415 26775415 PRJNA177642_P_NODE_17901_length_165_cov_1.058824_g16676_i0 PRJNA177642 17901 165 1.058824 1.7470596 root 1 Root_unresolved Root_unresolved 43.1 0.0094   NR CAB3266990.1 59560 g16676 i0 41.5 4.74545454545455 53 29 92.7 1 6 158 395 447 CAB3266990.1 reverse transcriptase [Phallusia mammillata] diamond 783 43.5 0.990804597701149 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata
30186409 30186409 PRJNA177642_P_NODE_11312_length_328_cov_1.307692_g10087_i0 PRJNA177642 11312 328 1.307692 4.28922976 Xenopus 8353 Chordata Chordata 47 0.00328   NR XP_018102548.1 8355 g10087 i0 55.9 1.55487804878049 34 15 31.1 0 2 103 386 419 XP_018102548.1 neuronal PAS domain-containing protein 2 isoform X1 [Xenopus laevis] diamond 510 47 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
31717428 31717428 PRJNA177642_P_NODE_14657_length_205_cov_1.227273_g13432_i0 PRJNA177642 14657 205 1.227273 2.51590965 Bombina bombina 8345 Chordata Chordata 74.7 1.25e-13   NR XP_053571558.1 8345 g13432 i0 62.9 1.81463414634146 62 23 90.7 0 193 8 802 863 XP_053571558.1 uncharacterized protein LOC128661312 [Bombina bombina] diamond 372 74.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bombinatoridae Bombina Bombina bombina
31717431 31717431 PRJNA177642_P_NODE_16617_length_171_cov_1.014085_g15392_i0 PRJNA177642 16617 171 1.014085 1.73408535 Callorhinchus milii 7868 Chordata Chordata 62.8 1.18e-9   NR XP_042201711.1 7868 g15392 i0 56.9 5.07017543859649 58 20 94.7 2 3 164 564 620 XP_042201711.1 LOW QUALITY PROTEIN: uncharacterized protein LOC121851711, partial [Callorhinchus milii] diamond 867 62.8 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Chimaeriformes Callorhinchidae Callorhinchus Callorhinchus milii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;