RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA177642" and tax_clade = "Discoba"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA177642 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4192574 4192574 PRJNA177642_P_NODE_15924_length_178_cov_1.885906_g14699_i0 PRJNA177642 15924 178 1.885906 3.35691268 Bodo edax 155204 Euglenozoa other_Eukaryota 189 1.1e-43   NTclustered gi|20331093|gb|AY028451.1| 155204 g14699 i0 93.182 43.0224719101124 132 3 71 6 1 127 2775 2645 Bodo edax 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 7658 189 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo edax
24007116 24007116 PRJNA177642_P_NODE_18779_length_159_cov_3.253846_g17554_i0 PRJNA177642 18779 159 3.253846 5.17361514 Entosiphon 101492 Euglenozoa other_Eukaryota 172 9.689999999999999e-39   NTclustered gi|41400272|gb|AY425008.1| 259048 g17554 i0 87.261 4.62264150943396 157 13 98 7 2 157 1014 1164 Entosiphon sp. TCS-2003 18S ribosomal RNA gene, partial sequence blastn 735 172 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Entosiphon Entosiphon sp. TCS 2003
27674369 27674369 PRJNA177642_P_NODE_17204_length_168_cov_1.035971_g15979_i0 PRJNA177642 17204 168 1.035971 1.74043128 Acrasis kona 1008807 Heterolobosea other_Eukaryota 55.1 3.96e-7   NR KAL0487086.1 1008807 g15979 i0 54.5 0.785714285714286 44 18 75 1 1 126 176 219 KAL0487086.1 alpha-ketoglutarate-dependent dioxygenase [Acrasis kona] diamond 132 55.1 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
28702462 28702462 PRJNA177642_P_NODE_10607_length_342_cov_2.776358_g9383_i0 PRJNA177642 10607 342 2.776358 9.49514436 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 125 1.32e-34   NR KAJ9469984.1 91374 g9383 i0 55.4 1.93859649122807 112 45 93.9 2 2 322 3 114 KAJ9469984.1 hypothetical protein DIPPA_35953 [Diplonema papillatum] diamond 663 125 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;