RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA177642", tax_clade = "Amoebozoa" and tax_phylum = "Evosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Evosea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA177642 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2916385 2916385 PRJNA177642_P_NODE_9063_length_387_cov_2.321229_g7847_i0 PRJNA177642 9063 387 2.321229 8.98315623 Soliformovum irregulare 435424 Evosea other_Eukaryota 268 3.37e-67   NTclustered gi|146448863|gb|EF513199.1| 435424 g7847 i0 81.176 79.0180878552972 340 58 87 6 29 365 1076 740 Soliformovum irregulare elongation factor 1A (EF1A) gene, partial cds blastn 30580 268 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Soliformoviidae Soliformovum Soliformovum irregulare
15082639 15082639 PRJNA177642_P_NODE_14932_length_199_cov_1.264706_g13707_i0 PRJNA177642 14932 199 1.264706 2.51676494 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 171 4.57e-38   NTclustered gi|2329703126|gb|MW239924.1| 75757 g13707 i0 82.051 51.1557788944724 195 35 98 0 3 197 381 575 Didymium nigripes strain MA-Fungi 80617 alpha tubulin (aTUB) gene, partial cds blastn 10180 172 0.994186046511628 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium nigripes
31147766 31147766 PRJNA177642_P_NODE_17395_length_167_cov_1.043478_g16170_i0 PRJNA177642 17395 167 1.043478 1.74260826 Dictyostelium purpureum 5786 Evosea other_Eukaryota 79 2.27e-15   NR XP_003291181.1 5786 g16170 i0 67.9 0.952095808383233 53 17 95.2 0 160 2 523 575 XP_003291181.1 5'-nucleotidase [Dictyostelium purpureum] diamond 159 79 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;