RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA177642", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 2 ✖

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA177642 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18906573 18906573 PRJNA177642_P_NODE_16755_length_170_cov_1.035461_g15530_i0 PRJNA177642 16755 170 1.035461 1.7602837 Vannellidae 95227 Discosea other_Eukaryota 289 9.949999999999999e-74   NTclustered gi|399764204|gb|JQ271715.1| 1217115 g15530 i0 97.633 93.7764705882353 169 3 99 1 1 169 1447 1614 Ripella sp. GP2 18S ribosomal RNA gene, partial sequence blastn 15942 289 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. GP2
19491702 19491702 PRJNA177642_P_NODE_8496_length_411_cov_1.719895_g7284_i0 PRJNA177642 8496 411 1.719895 7.06876845 Ripella sp. GP2 1217115 Discosea other_Eukaryota 628 1.43e-175   NTclustered gi|399764204|gb|JQ271715.1| 1217115 g7284 i0 94.417 99.1070559610706 412 17 100 5 1 411 569 975 Ripella sp. GP2 18S ribosomal RNA gene, partial sequence blastn 40733 628 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. GP2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;