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contig_metadata

30 rows where bioproject = "PRJNA169559", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 30 ✖

tax_phylum 1

  • Myxococcota · 30 ✖

tax_kingdom 1

bioproject 1

  • PRJNA169559 · 30 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
365001 365001 PRJNA169559_P_NODE_30821_length_261_cov_2.250000_g28745_i0 PRJNA169559 30821 261 2.25 5.8725 Chondromyces crocatus 52 Bacteria Bacteria 200 8.029999999999999e-47   NTclustered gi|908353314|gb|CP012159.1| 52 g28745 i0 89.809 85.6053639846743 157 14 60 2 17 172 697560 697405 Chondromyces crocatus strain Cm c5, complete genome blastn 22343 200 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus
4192066 4192066 PRJNA169559_P_NODE_25784_length_294_cov_1.350943_g23708_i0 PRJNA169559 25784 294 1.350943 3.97177242 Archangium gephyra 48 Bacteria Bacteria 52.8 0.027   NTclustered gi|827418478|gb|CP011509.1| 48 g23708 i0 100 0.0952380952380952 28 0 10 0 47 74 4865250 4865277 Archangium gephyra strain DSM 2261, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium gephyra
13118846 13118846 PRJNA169559_P_NODE_38231_length_239_cov_2.076190_g36154_i0 PRJNA169559 38231 239 2.07619 4.9620941 Sandaracinus amylolyticus 927083 Bacteria Bacteria 182 2.63e-41   NTclustered gi|2183633570|gb|CP070225.1| 927083 g36154 i0 81.659 4.20502092050209 229 32 94 10 1 224 2481757 2481980 Sandaracinus strain MSr10575 (SBSa001) chromosome, complete sequence blastn 1005 182 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus amylolyticus
13118895 13118895 PRJNA169559_P_NODE_46151_length_199_cov_1.976471_g44074_i0 PRJNA169559 46151 199 1.976471 3.93317729 Myxococcia 32015 Bacteria Bacteria 114 1.4e-28   NR MBL9008189.1 2026763 g44074 i0 74.2 5.96984924623116 66 17 99.5 0 2 199 45 110 MBL9008189.1 methyltransferase domain-containing protein [Myxococcales bacterium] diamond 1188 114 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
15667839 15667839 PRJNA169559_P_NODE_27313_length_281_cov_1.257937_g25237_i0 PRJNA169559 27313 281 1.257937 3.53480297 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 83.2 2.54e-16   NR MCK5797828.1 2026735 g25237 i0 50 0.96085409252669 90 36 96.1 1 1 270 316 396 MCK5797828.1 thiolase family protein [Deltaproteobacteria bacterium] diamond 270 83.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
15668020 15668020 PRJNA169559_P_NODE_4873_length_768_cov_2.420839_g3571_i0 PRJNA169559 4873 768 2.420839 18.59204352 Myxococcota bacterium 2818507 Bacteria Bacteria 155 7.32e-43   NR MFO0750939.1 2818507 g3571 i0 57.4 0.578125 148 59 57.4 3 764 324 41 185 MFO0750939.1 malonic semialdehyde reductase [Myxococcota bacterium] diamond 444 155 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
23317092 23317092 PRJNA169559_P_NODE_259_length_6893_cov_4.178030_g85_i0 PRJNA169559 259 6893 4.17803 287.9916079 Myxococcota bacterium 2818507 Bacteria Bacteria 108 2.65e-19   NR MDY0062934.1 2818507 g85 i0 28.9 0.215000725373567 494 321 21.3 23 2185 716 853 1320 MDY0062934.1 PKD domain-containing protein [Myxococcota bacterium] diamond 1482 108 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
26820927 26820927 PRJNA169559_P_NODE_12461_length_476_cov_3.299776_g10595_i0 PRJNA169559 12461 476 3.299776 15.70693376 Polyangiaceae bacterium 2268199 Bacteria Bacteria 60.1 2.34e-7   NR HEX9296472.1 2268199 g10595 i0 43.5 0.434873949579832 69 25 35.9 3 454 284 146 212 HEX9296472.1 hypothetical protein [Polyangiaceae bacterium] diamond 207 60.1 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
26820930 26820930 PRJNA169559_P_NODE_34101_length_250_cov_1.597285_g32024_i0 PRJNA169559 34101 250 1.597285 3.9932125 Cystobacter sp. 1965334 Bacteria Bacteria 55.1 4.67e-7   NR MET0402110.1 1965334 g32024 i0 44.4 0.972 81 43 97.2 1 2 244 62 140 MET0402110.1 MAPEG family protein [Cystobacter sp.] diamond 243 55.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter sp.
27231937 27231937 PRJNA169559_P_NODE_19763_length_377_cov_2.514368_g17729_i0 PRJNA169559 19763 377 2.514368 9.47916736 Myxococcota bacterium 2818507 Bacteria Bacteria 63.5 9.38e-9   NR MEW5847593.1 2818507 g17729 i0 35.9 0.931034482758621 117 69 93.1 3 364 14 863 973 MEW5847593.1 hypothetical protein [Myxococcota bacterium] diamond 351 63.5 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
27579401 27579401 PRJNA169559_P_NODE_23984_length_314_cov_17.554386_g21908_i0 PRJNA169559 23984 314 17.554386 55.12077204 Polyangia bacterium 3058050 Bacteria Bacteria 83.6 4.16e-16   NR HEY3358554.1 3058050 g21908 i0 42.1 1.02229299363057 107 58 98.4 1 3 311 1620 1726 HEY3358554.1 choice-of-anchor D domain-containing protein [Polyangia bacterium] diamond 321 83.6 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
27629010 27629010 PRJNA169559_P_NODE_41104_length_232_cov_2.187192_g39027_i0 PRJNA169559 41104 232 2.187192 5.07428544 Pseudomonadati 3379134 Bacteria Bacteria 79.3 3.99e-16   NR MBI5587846.1 2026735 g39027 i0 45.8 15.0129310344828 96 30 95.7 1 230 9 82 177 MBI5587846.1 NAD(P)H:quinone oxidoreductase [Deltaproteobacteria bacterium] diamond 3483 79.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27849671 27849671 PRJNA169559_P_NODE_12264_length_480_cov_2.239468_g10403_i0 PRJNA169559 12264 480 2.239468 10.7494464 Bacteria 2 Bacteria Bacteria 47 0.0143   NR MBT6489693.1 2026735 g10403 i0 50 1.23125 58 22 31.9 3 309 157 1281 1338 MBT6489693.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 591 47 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27895083 27895083 PRJNA169559_P_NODE_5505_length_724_cov_2.212950_g4121_i0 PRJNA169559 5505 724 2.21295 16.021758 Myxococcota bacterium 2818507 Bacteria Bacteria 47 0.0252   NR MEC7242421.1 2818507 g4121 i0 31.5 0.526243093922652 127 61 50.6 4 226 591 115 220 MEC7242421.1 hypothetical protein [Myxococcota bacterium] diamond 381 47 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
28084525 28084525 PRJNA169559_P_NODE_37125_length_242_cov_1.474178_g35048_i0 PRJNA169559 37125 242 1.474178 3.56751076 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 62.8 3.07e-9   NR MBI5885918.1 2026735 g35048 i0 90.9 3.33471074380165 33 3 40.9 0 103 5 36 68 MBI5885918.1 phosphopyruvate hydratase [Deltaproteobacteria bacterium] diamond 807 62.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28481343 28481343 PRJNA169559_P_NODE_14906_length_436_cov_2.533170_g12965_i0 PRJNA169559 14906 436 2.53317 11.0446212 Bacteria 2 Bacteria Bacteria 47 0.00983   NR MBT6489693.1 2026735 g12965 i0 50 1.35550458715596 58 22 35.1 3 175 327 1281 1338 MBT6489693.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 591 47 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28796852 28796852 PRJNA169559_P_NODE_21007_length_358_cov_5.580547_g18950_i0 PRJNA169559 21007 358 5.580547 19.97835826 Pseudomonadati 3379134 Bacteria Bacteria 88.2 8.97e-19   NR MCA9634375.1 2026763 g18950 i0 61.5 1.25698324022346 65 25 54.5 0 195 1 75 139 MCA9634375.1 hypothetical protein [Myxococcales bacterium] diamond 450 89 0.991011235955056 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
29189878 29189878 PRJNA169559_P_NODE_11809_length_490_cov_3.052061_g9966_i0 PRJNA169559 11809 490 3.052061 14.9550989 Myxococcota bacterium 2818507 Bacteria Bacteria 79.7 7.61e-14   NR MFT7620850.1 2818507 g9966 i0 36.5 0.955102040816327 156 93 94.3 4 28 489 132 283 MFT7620850.1 putative repeat protein (TIGR01451 family) [Myxococcota bacterium] diamond 468 79.7 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
29189881 29189881 PRJNA169559_P_NODE_26649_length_286_cov_1.521401_g24573_i0 PRJNA169559 26649 286 1.521401 4.35120686 Chondromyces crocatus 52 Bacteria Bacteria 51.6 4.28e-5   NR WP_245678411.1 52 g24573 i0 58.8 1.06993006993007 34 14 35.7 0 284 183 255 288 WP_245678411.1 glutamine amidotransferase [Chondromyces crocatus] diamond 306 51.6 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus
29189883 29189883 PRJNA169559_P_NODE_729_length_1926_cov_4.262520_g329_i2 PRJNA169559 729 1926 4.26252 82.0961352 Myxococcales bacterium 2026763 Bacteria Bacteria 67.8 1.29e-7   NR HUB08891.1 2026763 g329 i2 42 0.384735202492212 119 57 18.5 5 1360 1004 214 320 HUB08891.1 hypothetical protein [Myxococcales bacterium] diamond 741 67.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
29333829 29333829 PRJNA169559_P_NODE_8709_length_576_cov_3.552102_g7045_i0 PRJNA169559 8709 576 3.552102 20.46010752 Pseudomonadati 3379134 Bacteria Bacteria 117 2.15e-29   NR NTV33430.1 2026735 g7045 i0 44 3.82291666666667 141 77 72.4 2 101 517 29 169 NTV33430.1 lipocalin family protein [Deltaproteobacteria bacterium] diamond 2202 117 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29347661 29347661 PRJNA169559_P_NODE_34429_length_249_cov_1.672727_g32352_i0 PRJNA169559 34429 249 1.672727 4.16509023 Anaeromyxobacteraceae bacterium 2510643 Bacteria Bacteria 72 1.83e-12   NR HSN93353.1 2510643 g32352 i0 48.1 2.93975903614458 81 33 97.6 1 247 5 130 201 HSN93353.1 aspartate aminotransferase family protein [Anaeromyxobacteraceae bacterium] diamond 732 72 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae   Anaeromyxobacteraceae bacterium
29916149 29916149 PRJNA169559_P_NODE_27871_length_277_cov_1.471774_g25795_i0 PRJNA169559 27871 277 1.471774 4.07681398 Polyangium aurulentum 2567896 Bacteria Bacteria 50.1 1.49e-4   NR WP_136920884.1 2567896 g25795 i0 65.6 1.03971119133574 32 11 34.7 0 182 277 238 269 WP_136920884.1 M4 family metallopeptidase [Polyangium aurulentum] diamond 288 50.1 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium aurulentum
30516235 30516235 PRJNA169559_P_NODE_23813_length_317_cov_1.805556_g21738_i0 PRJNA169559 23813 317 1.805556 5.72361252 Myxococcales bacterium 2026763 Bacteria Bacteria 51.2 9.62e-5   NR MBT9558510.1 2026763 g21738 i0 51 0.482649842271293 51 23 46.4 2 167 313 755 805 MBT9558510.1 hypothetical protein [Myxococcales bacterium] diamond 153 51.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
30547819 30547819 PRJNA169559_P_NODE_18853_length_390_cov_4.770083_g16841_i0 PRJNA169559 18853 390 4.770083 18.6033237 Myxococcota bacterium 2818507 Bacteria Bacteria 54.3 4.12e-6   NR MEO0460890.1 2818507 g16841 i0 47.3 0.423076923076923 55 27 40.8 1 129 287 7 61 MEO0460890.1 hypothetical protein [Myxococcota bacterium] diamond 165 54.3 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
31496226 31496226 PRJNA169559_P_NODE_11236_length_502_cov_2.896406_g9413_i0 PRJNA169559 11236 502 2.896406 14.53995812 Polyangiaceae bacterium 2268199 Bacteria Bacteria 60.1 2.93e-7   NR HEX9296472.1 2268199 g9413 i0 43.5 0.412350597609562 69 25 34.1 3 23 193 146 212 HEX9296472.1 hypothetical protein [Polyangiaceae bacterium] diamond 207 60.1 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
31780554 31780554 PRJNA169559_P_NODE_717_length_1945_cov_4.160230_g329_i1 PRJNA169559 717 1945 4.16023 80.9164735 Myxococcales bacterium 2026763 Bacteria Bacteria 67.8 1.31e-7   NR HUB08891.1 2026763 g329 i1 42 0.380976863753213 119 57 18.4 5 1379 1023 214 320 HUB08891.1 hypothetical protein [Myxococcales bacterium] diamond 741 67.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
32019990 32019990 PRJNA169559_P_NODE_19478_length_381_cov_3.116477_g17447_i0 PRJNA169559 19478 381 3.116477 11.873777370000001 Pseudomonadati 3379134 Bacteria Bacteria 73.9 1.77e-12   NR MDP2602186.1 2026735 g17447 i0 43.8 2.93700787401575 128 57 97.6 3 377 6 53 169 MDP2602186.1 Calx-beta domain-containing protein [Deltaproteobacteria bacterium] diamond 1119 73.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32160531 32160531 PRJNA169559_P_NODE_23178_length_326_cov_1.572391_g21107_i0 PRJNA169559 23178 326 1.572391 5.12599466 Myxococcota bacterium 2818507 Bacteria Bacteria 51.2 1.09e-4   NR MEW5847593.1 2818507 g21107 i0 37.8 1.02147239263804 111 50 94.8 6 326 18 798 897 MEW5847593.1 hypothetical protein [Myxococcota bacterium] diamond 333 51.2 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
32603166 32603166 PRJNA169559_P_NODE_7040_length_639_cov_12.549180_g5514_i0 PRJNA169559 7040 639 12.54918 80.1892602 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 56.6 2.22e-5   NR MCX7958294.1 2026735 g5514 i0 53.1 0.230046948356808 49 22 23 1 639 493 660 707 MCX7958294.1 choice-of-anchor D domain-containing protein [Deltaproteobacteria bacterium] diamond 147 56.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;