RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA169559", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA169559 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10569099 10569099 PRJNA169559_P_NODE_32769_length_254_cov_1.782222_g30693_i0 PRJNA169559 32769 254 1.782222 4.52684388 Helicobacter pylori 210 Bacteria Bacteria 56.5 0.002   NTclustered gi|2642906837|gb|CP078917.1| 210 g30693 i0 92.308 1.89763779527559 39 3 15 0 2 40 1492540 1492502 Helicobacter pylori strain HpGP-FRA-018 chromosome, complete genome blastn 482 56.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32097049 32097049 PRJNA169559_P_NODE_7758_length_610_cov_3.337349_g1704_i1 PRJNA169559 7758 610 3.337349 20.3578289 Campylobacterota bacterium 2026809 Bacteria Bacteria 92 1.17e-17   NR RLA63146.1 2026809 g1704 i1 58.4 0.437704918032787 89 36 43.8 1 267 1 207 294 RLA63146.1 MAG: hypothetical protein DRQ88_12785 [Campylobacterota bacterium] diamond 267 92 1 Bacteria   Pseudomonadati Campylobacterota         Campylobacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;