RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA169559", tax_kingdom = "Fungi" and tax_phylum = "Blastocladiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 4 ✖

tax_kingdom 1

  • Fungi · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA169559 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13119005 13119005 PRJNA169559_P_NODE_8591_length_580_cov_2.502722_g6941_i0 PRJNA169559 8591 580 2.502722 14.5157876 Blastocladiella 4807 Fungi Fungi 263 2.6800000000000003e-79   NR KAI9217214.1 64508 g6941 i0 65.2 66.998275862069 207 50 95.7 2 559 5 11 217 KAI9217214.1 Spb1 C-terminal domain-containing protein [Blastocladiella britannica] diamond 38859 265 0.992452830188679 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella britannica
18216889 18216889 PRJNA169559_P_NODE_7415_length_623_cov_1.715488_g5860_i0 PRJNA169559 7415 623 1.715488 10.68749024 Blastocladiella emersonii 4808 Fungi Fungi 283 2.01e-71   NTclustered gi|108949307|gb|DQ533709.1| 4808 g5860 i0 85.87 45.6163723916533 276 26 42 6 197 459 1537 1262 Blastocladiella emersonii propionyl coenzyme A carboxylase mRNA, partial cds blastn 28419 283 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii
24591443 24591443 PRJNA169559_P_NODE_4880_length_767_cov_5.001355_g3577_i0 PRJNA169559 4880 767 5.001355 38.36039285 Fungi 4751 Fungi Fungi 224 1.1999999999999998e-69   NR KAJ3366916.1 64504 g3577 i0 55.3 7.748370273794 217 95 84.1 1 22 666 1 217 KAJ3366916.1 40S ribosomal protein S6 [Allomyces arbusculus] diamond 5943 226 0.991150442477876 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces arbusculus
27786869 27786869 PRJNA169559_P_NODE_20144_length_371_cov_2.055556_g18101_i0 PRJNA169559 20144 371 2.055556 7.62611276 root 1 Root_unresolved Root_unresolved 122 5.77e-30   NR KAJ3364810.1 64505 g18101 i0 68.7 8.09433962264151 83 26 67.1 0 123 371 307 389 KAJ3364810.1 2-oxoglutarate dehydrogenase complex E2 component [Allomyces javanicus] diamond 3003 122 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces javanicus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;