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contig_metadata

29 rows where bioproject = "PRJNA169559" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 29 ✖

bioproject 1

  • PRJNA169559 · 29 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1639798 1639798 PRJNA169559_P_NODE_27642_length_278_cov_4.646586_g25566_i0 PRJNA169559 27642 278 4.646586 12.91750908 Haematococcus lacustris 44745 Plants Plants 446 9.999999999999998e-121   NTclustered gi|1279575454|gb|MF683078.1| 44745 g25566 i0 97.683 307.863309352518 259 6 93 0 1 259 2820 3078 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 85586 446 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
1639892 1639892 PRJNA169559_P_NODE_44822_length_217_cov_2.622340_g42745_i0 PRJNA169559 44822 217 2.62234 5.6904778 Chlamydomonas reinhardtii 3055 Plants Plants 62.1 3.18e-5   NTclustered gi|2082253574|ref|XM_043066114.1| 3055 g42745 i0 97.222 2.03225806451613 36 1 17 0 57 92 2714 2679 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_09g403400v5), mRNA blastn 441 62.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
2330085 2330085 PRJNA169559_P_NODE_22742_length_331_cov_74.844371_g20672_i0 PRJNA169559 22742 331 74.844371 247.73486801 Trebouxia 13786 Plants Plants 582 8.939999999999999e-162   NTclustered gi|1273623725|gb|KY033354.1| 285713 g20672 i0 98.485 99.4018126888217 330 5 99 0 1 330 6304 6633 Uncultured Trebouxia photobiont voucher Lendemer 46119 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 32902 582 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia uncultured Trebouxia photobiont
4192134 4192134 PRJNA169559_P_NODE_34204_length_249_cov_50.190909_g32127_i0 PRJNA169559 34204 249 50.190909 124.97536341 Haematococcus lacustris 44745 Plants Plants 416 6.939999999999999e-112   NTclustered gi|1279575454|gb|MF683078.1| 44745 g32127 i0 96.787 288.971887550201 249 8 100 0 1 249 2252 2500 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 71954 416 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
4192190 4192190 PRJNA169559_P_NODE_44124_length_222_cov_2.362694_g42047_i0 PRJNA169559 44124 222 2.362694 5.24518068 Auxenochlorella protothecoides 3075 Plants Plants 141 4.09e-29   NTclustered gi|760445552|ref|XM_011401543.1| 3075 g42047 i0 84.892 18.2387387387387 139 21 63 0 4 142 1293 1155 Auxenochlorella protothecoides V-type proton ATPase catalytic subunit A isoform 1 partial mRNA blastn 4049 141 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
5468174 5468174 PRJNA169559_P_NODE_13405_length_458_cov_3.480186_g11502_i0 PRJNA169559 13405 458 3.480186 15.93925188 Volvox carteri 3067 Plants Plants 56.5 0.003   NTclustered gi|302849719|ref|XM_002956343.1| 3068 g11502 i0 100 0.37117903930131 30 0 7 0 316 345 666 637 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_97422), partial mRNA blastn 170 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
9292933 9292933 PRJNA169559_P_NODE_12128_length_483_cov_5.658590_g4111_i1 PRJNA169559 12128 483 5.65859 27.3309897 Haematococcus lacustris 44745 Plants Plants 673 0   NTclustered gi|1279575454|gb|MF683078.1| 44745 g4111 i1 96.333 117.728778467909 409 15 85 0 75 483 3311 3719 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 56863 673 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
10569077 10569077 PRJNA169559_P_NODE_29569_length_267_cov_1.651261_g27493_i0 PRJNA169559 29569 267 1.651261 4.40886687 Chlamydomonas reinhardtii 3055 Plants Plants 132 3.05e-26   NTclustered gi|2082247365|ref|XM_043062922.1| 3055 g27493 i0 87.611 7.08614232209738 113 14 42 0 1 113 1137 1249 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g269950v5), mRNA blastn 1892 132 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
10569177 10569177 PRJNA169559_P_NODE_45969_length_201_cov_8.343023_g43892_i0 PRJNA169559 45969 201 8.343023 16.76947623 Haematococcus lacustris 44745 Plants Plants 350 5.539999999999999e-92   NTclustered gi|1279575454|gb|MF683078.1| 44745 g43892 i0 100 401.278606965174 189 0 94 0 1 189 4197 4009 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 80657 350 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
15667754 15667754 PRJNA169559_P_NODE_19933_length_374_cov_11.330435_g17894_i0 PRJNA169559 19933 374 11.330435 42.3758269 Coccomyxa subellipsoidea 248742 Plants Plants 62.1 5.91e-5   NTclustered gi|545365919|ref|XM_005647835.1| 574566 g17894 i0 95 1.58021390374332 40 1 10 1 295 333 408 447 Coccomyxa subellipsoidea C-169 hypothetical protein partial mRNA blastn 591 62.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
15668028 15668028 PRJNA169559_P_NODE_5493_length_724_cov_116.759712_g4111_i0 PRJNA169559 5493 724 116.759712 845.34031488 Haematococcus lacustris 44745 Plants Plants 669 0   NTclustered gi|1279575454|gb|MF683078.1| 44745 g4111 i0 97.215 269.270718232044 395 11 55 0 330 724 3325 3719 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 194952 669 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
16942304 16942304 PRJNA169559_P_NODE_3114_length_939_cov_5.893407_g2084_i0 PRJNA169559 3114 939 5.893407 55.33909173 Prototheca wickerhamii 3111 Plants Plants 333 4.95e-111   NR KAK2077087.1 3111 g2084 i0 61.6 1.84345047923323 289 106 92 3 905 42 4 288 KAK2077087.1 60S ribosomal protein L5-B [Prototheca wickerhamii] diamond 1731 333 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
22731579 22731579 PRJNA169559_P_NODE_18658_length_393_cov_2.771978_g16650_i0 PRJNA169559 18658 393 2.771978 10.89387354 Chlorophyta 3041 Plants Plants 128 5.53e-33   NR PRW59308.1 3076 g16650 i0 71 7.09923664122137 93 12 59.5 1 392 159 102 194 PRW59308.1 succinyl- -ligase alpha subunit [Chlorella sorokiniana] diamond 2790 129 0.992248062015504 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana
23316985 23316985 PRJNA169559_P_NODE_17359_length_408_cov_2.277045_g15369_i0 PRJNA169559 17359 408 2.277045 9.2903436 Eukaryota 2759 Plants Plants 163 7.24e-44   NR XP_002954858.1 3068 g15369 i0 69.9 9.10294117647059 136 40 100 1 1 408 217 351 XP_002954858.1 uncharacterized protein VOLCADRAFT_76494 [Volvox carteri f. nagariensis] diamond 3714 164 0.99390243902439 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
25280863 25280863 PRJNA169559_P_NODE_21540_length_350_cov_1.844237_g19477_i0 PRJNA169559 21540 350 1.844237 6.4548295 Eukaryota 2759 Plants Plants 52.8 0.033   NTclustered gi|2082262198|ref|XM_043068965.1| 3055 g19477 i0 100 0.248571428571429 28 0 8 0 44 71 1699 1672 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_12g550000v5), mRNA blastn 87 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
27611131 27611131 PRJNA169559_P_NODE_21444_length_351_cov_3.400621_g19381_i0 PRJNA169559 21444 351 3.400621 11.93617971 Coccomyxa viridis 1274662 Plants Plants 72.8 3.25e-12   NR CAK0787185.1 1274662 g19381 i0 47.7 0.555555555555556 65 32 55.6 1 18 212 344 406 CAK0787185.1 hypothetical protein CVIRNUC_010401 [Coccomyxa viridis] diamond 195 72.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa viridis
28495248 28495248 PRJNA169559_P_NODE_29687_length_266_cov_2.873418_g27611_i0 PRJNA169559 29687 266 2.873418 7.64329188 Chlamydomonas eustigma 1157962 Plants Plants 45.1 0.00711   NR GAX75578.1 1157962 g27611 i0 40 1.78195488721805 75 40 84.6 2 261 37 242 311 GAX75578.1 hypothetical protein CEUSTIGMA_g3021.t1 [Chlamydomonas eustigma] diamond 474 45.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas eustigma
28702459 28702459 PRJNA169559_P_NODE_27187_length_282_cov_1.201581_g25111_i0 PRJNA169559 27187 282 1.201581 3.38845842 Chlorophyta 3041 Plants Plants 43.1 0.0437   NR KAK2078340.1 3111 g25111 i0 65.5 0.617021276595745 29 10 30.9 0 87 1 41 69 KAK2078340.1 hypothetical protein QBZ16_003180 [Prototheca wickerhamii] diamond 174 43.5 0.990804597701149 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
28905287 28905287 PRJNA169559_P_NODE_11008_length_508_cov_2.505219_g9201_i0 PRJNA169559 11008 508 2.505219 12.72651252 Chlamydomonas schloesseri 2026947 Plants Plants 53.1 1.28e-4   NR KAG2451260.1 2026947 g9201 i0 63.8 0.27755905511811 47 17 27.8 0 2 142 207 253 KAG2451260.1 hypothetical protein HYH02_003867 [Chlamydomonas schloesseri] diamond 141 53.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas schloesseri
29000644 29000644 PRJNA169559_P_NODE_20508_length_366_cov_1.596439_g18460_i0 PRJNA169559 20508 366 1.596439 5.84296674 Picochlorum sp. BPE23 2696299 Plants Plants 68.2 1.79e-10   NR KAI8112067.1 2696299 g18460 i0 37.2 1.77049180327869 121 66 92.6 4 23 361 117 235 KAI8112067.1 hypothetical protein M9434_003391 [Picochlorum sp. BPE23] diamond 648 68.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Picochlorum Picochlorum sp. BPE23
29442044 29442044 PRJNA169559_P_NODE_24850_length_304_cov_2.094545_g22774_i0 PRJNA169559 24850 304 2.094545 6.3674168 Symbiochloris irregularis 706552 Plants Plants 49.3 1.08e-4   NR KAK9812340.1 706552 g22774 i0 50 0.414473684210526 42 21 41.4 0 130 5 61 102 KAK9812340.1 hypothetical protein WJX73_003378 [Symbiochloris irregularis] diamond 126 49.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Symbiochloris Symbiochloris irregularis
29554643 29554643 PRJNA169559_P_NODE_46970_length_186_cov_2.000000_g44893_i0 PRJNA169559 46970 186 2 3.72 Eukaryota 2759 Plants Plants 58.2 6.2e-8   NR KXZ49964.1 33097 g44893 i0 71.4 3.53225806451613 35 10 56.5 0 107 3 195 229 KXZ49964.1 hypothetical protein GPECTOR_18g121 [Gonium pectorale] diamond 657 58.5 0.994871794871795 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Gonium Gonium pectorale
30755295 30755295 PRJNA169559_P_NODE_37934_length_240_cov_1.454976_g35857_i0 PRJNA169559 37934 240 1.454976 3.4919424 Eukaryota 2759 Plants Plants 57 2.77e-7   NR KAG2482893.1 47281 g35857 i0 92.3 3.9 26 2 32.5 0 239 162 61 86 KAG2482893.1 hypothetical protein HYH03_018236 [Edaphochlamys debaryana] diamond 936 57 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales   Edaphochlamys Edaphochlamys debaryana
31021821 31021821 PRJNA169559_P_NODE_10595_length_519_cov_5.171429_g8813_i0 PRJNA169559 10595 519 5.171429 26.83971651 Monoraphidium minutum 39955 Plants Plants 48.5 0.0018600000000000001   NR KAI8468561.1 39955 g8813 i0 28 0.682080924855491 118 82 67.1 3 399 52 12 128 KAI8468561.1 MAG: ML domain-containing protein [Monoraphidium minutum] diamond 354 48.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium minutum
31228952 31228952 PRJNA169559_P_NODE_46655_length_191_cov_2.179012_g44578_i0 PRJNA169559 46655 191 2.179012 4.16191292 Eukaryota 2759 Plants Plants 72.4 6.43e-13   NR GAX82774.1 1157962 g44578 i0 50.7 4.33507853403141 69 17 81.7 1 189 34 512 580 GAX82774.1 hypothetical protein CEUSTIGMA_g10200.t1 [Chlamydomonas eustigma] diamond 828 72.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas eustigma
31260824 31260824 PRJNA169559_P_NODE_35415_length_246_cov_2.493088_g33338_i0 PRJNA169559 35415 246 2.493088 6.13299648 Eukaryota 2759 Plants Plants 59.3 4.94e-8   NR GFH18554.1 44745 g33338 i0 77.1 1.78048780487805 35 8 42.7 0 127 231 262 296 GFH18554.1 uncharacterized protein HaLaN_15380 [Haematococcus lacustris] diamond 438 59.7 0.993299832495812 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
31355825 31355825 PRJNA169559_P_NODE_13516_length_456_cov_2.503513_g11609_i0 PRJNA169559 13516 456 2.503513 11.41601928 Coccomyxa 41891 Plants Plants 46.6 0.0148   NR XP_005644462.1 574566 g11609 i0 26.8 2.73684210526316 142 97 90.1 3 451 41 552 691 XP_005644462.1 eukaryotic initiation factor [Coccomyxa subellipsoidea C-169] diamond 1248 47 0.991489361702128 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
31369746 31369746 PRJNA169559_P_NODE_25276_length_299_cov_2.107407_g23200_i0 PRJNA169559 25276 299 2.107407 6.30114693 Bryopsis sp. KO-2 3115439 Plants Plants 42 0.0287   NR GMH39545.1 3041901 g23200 i0 44.7 0.381270903010033 38 21 38.1 0 297 184 11 48 GMH39545.1 hypothetical protein BSKO_07443 [Bryopsis sp. KO-2023] diamond 114 42 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis sp. KO-2023
32033822 32033822 PRJNA169559_P_NODE_11878_length_488_cov_29.745098_g10034_i0 PRJNA169559 11878 488 29.745098 145.15607824 Pedinophyceae sp. YPF-7 765719 Plants Plants 102 1.13e-24   NR CAG9460866.1 765719 g10034 i0 46.8 0.866803278688525 141 56 86.7 2 6 428 1 122 CAG9460866.1 unnamed protein product [Pedinophyceae sp. YPF-701] diamond 423 102 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Pedinophyceae       Pedinophyceae sp. YPF-701

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;