RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA169559", tax_clade = "Metamonada" and tax_phylum = "Fornicata"

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tax_superkingdom 1

tax_phylum 1

  • Fornicata · 6 ✖

tax_clade 1

  • Metamonada · 6 ✖

bioproject 1

  • PRJNA169559 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27737632 27737632 PRJNA169559_P_NODE_7624_length_615_cov_5.858362_g6055_i0 PRJNA169559 7624 615 5.858362 36.0289263 Giardia intestinalis 5741 Fornicata other_Eukaryota 46.6 0.0365   NR ESU41510.1 5741 g6055 i0 30.6 0.590243902439024 121 59 47.3 4 54 344 239 358 ESU41510.1 Variant-specific surface protein [Giardia intestinalis] diamond 363 46.6 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
28210750 28210750 PRJNA169559_P_NODE_8786_length_573_cov_9.672794_g7118_i0 PRJNA169559 8786 573 9.672794 55.42510962 Carpediemonas membranifera 201153 Fornicata other_Eukaryota 112 1.1e-27   NR KAG9392754.1 201153 g7118 i0 39.7 0.910994764397906 174 90 89 7 572 63 1 163 KAG9392754.1 Translationally controlled tumor protein [Carpediemonas membranifera] diamond 522 112 1 Eukaryota Metamonada   Fornicata       Carpediemonas Carpediemonas membranifera
28242335 28242335 PRJNA169559_P_NODE_29546_length_267_cov_2.025210_g27470_i0 PRJNA169559 29546 267 2.02521 5.4073107 Spironucleus salmonicida 348837 Fornicata other_Eukaryota 47 0.00147   NR XP_067762644.1 348837 g27470 i0 45.2 0.471910112359551 42 23 47.2 0 266 141 54 95 XP_067762644.1 Cysteine-rich membrane protein 1 [Spironucleus salmonicida] diamond 126 47 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Spironucleus Spironucleus salmonicida
28526867 28526867 PRJNA169559_P_NODE_547_length_2339_cov_5.006494_g230_i0 PRJNA169559 547 2339 5.006494 117.10189466 Kipferlia bialata 797122 Fornicata other_Eukaryota 52.8 0.00961   NR GIQ80334.1 797122 g230 i0 26.3 0.262932877297991 205 131 24 7 1684 1124 719 921 GIQ80334.1 hypothetical protein KIPB_001114, partial [Kipferlia bialata] diamond 615 52.8 1 Eukaryota Metamonada   Fornicata       Kipferlia Kipferlia bialata
30200084 30200084 PRJNA169559_P_NODE_8852_length_571_cov_4.339483_g7183_i0 PRJNA169559 8852 571 4.339483 24.77844793 Kipferlia bialata 797122 Fornicata other_Eukaryota 47.8 0.0117   NR GIQ83316.1 797122 g7183 i0 33.7 0.45183887915937 86 46 45.2 2 268 11 45 119 GIQ83316.1 hypothetical protein KIPB_004620 [Kipferlia bialata] diamond 258 47.8 1 Eukaryota Metamonada   Fornicata       Kipferlia Kipferlia bialata
32381903 32381903 PRJNA169559_P_NODE_19639_length_379_cov_1.397143_g17607_i0 PRJNA169559 19639 379 1.397143 5.29517197 Giardia muris 5742 Fornicata other_Eukaryota 51.6 1.32e-4   NR TNJ26588.1 5742 g17607 i0 48.8 0.688654353562005 43 22 34 0 116 244 147 189 TNJ26588.1 pVSP [Giardia muris] diamond 261 51.6 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia muris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;