RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA168635" and tax_phylum = "Synergistota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Synergistota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA168635 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8017707 8017707 PRJNA168635_P_NODE_15707_length_202_cov_2.039216_g15291_i0 PRJNA168635 15707 202 2.039216 4.11921632 Synergistales bacterium 2268201 Bacteria Bacteria 122 1.32e-23   NTclustered gi|2621703689|emb|OY762654.1| 2268201 g15291 i0 82.237 228.054455445545 152 18 73 9 5 151 236721 236868 MAG: Synergistales bacterium isolate e2a2af2a-30b9-47e3-8e03-f1be080e1666 genome assembly, chromosome: 1 blastn 46067 122 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales     Synergistales bacterium
14393778 14393778 PRJNA168635_P_NODE_34992_length_153_cov_2.730769_g34576_i0 PRJNA168635 34992 153 2.730769 4.17807657 Synergistaceae bacterium 2053624 Bacteria Bacteria 108 2.64e-19   NTclustered gi|2626233883|emb|OY821326.1| 2053624 g34576 i0 83.929 11.0392156862745 112 18 79 0 42 153 324065 323954 MAG: Synergistaceae bacterium isolate a20e232d-ae79-494a-a7eb-231c2e3632a3 genome assembly, chromosome: 1 blastn 1689 108 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
28431977 28431977 PRJNA168635_P_NODE_22066_length_176_cov_2.031496_g21650_i0 PRJNA168635 22066 176 2.031496 3.57543296 Thermovirgaceae bacterium 3041276 Bacteria Bacteria 54.3 1.25e-6   NR MFA5674502.1 3041276 g21650 i0 47.2 0.903409090909091 53 25 85.2 1 8 157 440 492 MFA5674502.1 hypothetical protein [Thermovirgaceae bacterium] diamond 159 54.3 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Thermovirgaceae   Thermovirgaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;