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contig_metadata

30 rows where bioproject = "PRJNA168635" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 30 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA168635 · 30 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1054255 1054255 PRJNA168635_P_NODE_18121_length_189_cov_1.464286_g17705_i0 PRJNA168635 18121 189 1.464286 2.76750054 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 87 1.87e-18   NR NP_001370645.1 6239 g17705 i0 87.2 422.968253968254 47 6 74.6 0 143 3 190 236 NP_001370645.1 TATA-box-binding protein [Caenorhabditis elegans] diamond 79941 87 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
2915170 2915170 PRJNA168635_P_NODE_23363_length_173_cov_1.564516_g22947_i0 PRJNA168635 23363 173 1.564516 2.70661268 Bursaphelenchus cryphali 2419845 Nematoda Nematoda 93.5 8.56e-15   NTclustered gi|1942115846|dbj|LC425131.2| 2419846 g22947 i0 86.747 8.60115606936416 83 11 48 0 57 139 2622 2540 Bursaphelenchus cryphali okhotskensis genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence blastn 1488 93.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus cryphali
2915302 2915302 PRJNA168635_P_NODE_33423_length_158_cov_2.504587_g33007_i0 PRJNA168635 33423 158 2.504587 3.95724746 Strongyloides papillosus 174720 Nematoda Nematoda 65.8 1.68e-6   NTclustered gi|690018462|emb|LM525700.1| 174720 g33007 i0 85.938 14.6518987341772 64 5 39 4 1 62 30280 30219 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000096 blastn 2315 65.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
4191449 4191449 PRJNA168635_P_NODE_14404_length_212_cov_4.607362_g13988_i0 PRJNA168635 14404 212 4.607362 9.76760744 Spauligodon cf. giganticus 3122060 Nematoda Nematoda 65.8 2.39e-6   NTclustered gi|2677150328|gb|PP352610.1| 3122060 g13988 i0 97.368 17.5424528301887 38 1 18 0 5 42 2176 2213 Spauligodon cf. giganticus isolate SPAUL large subunit ribosomal RNA gene, partial sequence blastn 3719 65.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pharyngodonidae Spauligodon Spauligodon cf. giganticus
5467587 5467587 PRJNA168635_P_NODE_12825_length_227_cov_1.589888_g12409_i0 PRJNA168635 12825 227 1.589888 3.60904576 Rhabditis sp. DF5059 479136 Nematoda Nematoda 237 5.199999999999999e-58   NTclustered gi|158821900|gb|EU195964.1| 479136 g12409 i0 93.711 307.696035242291 159 9 70 1 69 227 3101 2944 Rhabditis sp. DF5059 28S ribosomal RNA gene, partial sequence blastn 69847 237 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditis Rhabditis sp. DF5059
9292375 9292375 PRJNA168635_P_NODE_12488_length_230_cov_3.895028_g12072_i0 PRJNA168635 12488 230 3.895028 8.9585644 Oscheius tipulae 141969 Nematoda Nematoda 65.8 2.64e-6   NTclustered gi|158821905|gb|EU195969.1| 141969 g12072 i0 97.368 0.68695652173913 38 1 17 0 111 148 1391 1354 Oscheius tipulae strain CEW1 28S ribosomal RNA gene, partial sequence blastn 158 65.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Oscheius Oscheius tipulae
9292483 9292483 PRJNA168635_P_NODE_1768_length_602_cov_41.300181_g1410_i0 PRJNA168635 1768 602 41.300181 248.62708962 Hirschmanniella sp. 1 SBJ-2017 1969345 Nematoda Nematoda 172 4.38e-38   NTclustered gi|1159842617|gb|KY773577.1| 1969345 g1410 i0 88.356 24.943521594684398 146 14 24 3 458 602 633 776 Hirschmanniella sp. 1 SBJ-2017 strain HFL1 large subunit ribosomal RNA gene, partial sequence blastn 15016 172 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Hirschmanniella Hirschmanniella sp. 1 SBJ-2017
9982192 9982192 PRJNA168635_P_NODE_10388_length_256_cov_3.816425_g9973_i0 PRJNA168635 10388 256 3.816425 9.770048 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 167 7.969999999999999e-37   NTclustered gi|13992711|gb|AF133304.2|AF133304 51029 g9973 i0 79.447 100.08203125 253 38 96 13 1 245 634 880 Heterodera glycines 28S ribosomal RNA gene, partial sequence blastn 25621 167 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera glycines
10568532 10568532 PRJNA168635_P_NODE_21849_length_177_cov_1.148438_g21433_i0 PRJNA168635 21849 177 1.148438 2.03273526 Pristionchus sp. 15 RS5229 452809 Nematoda Nematoda 108 3.15e-19   NTclustered gi|150984457|gb|EF634871.1| 452809 g21433 i0 81.481 17.4689265536723 135 21 75 3 45 177 157 289 Pristionchus sp. 15 RS5229 small subunit ribosomal protein 8 (rps-8) mRNA, partial cds blastn 3092 108 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 15 RS5229
10568697 10568697 PRJNA168635_P_NODE_33309_length_158_cov_3.623853_g32893_i0 PRJNA168635 33309 158 3.623853 5.72568774 Pseudacrobeles sp. JB-56 345505 Nematoda Nematoda 158 2.69e-34   NTclustered gi|76560676|gb|DQ145701.1| 345505 g32893 i0 85.161 98.5253164556962 155 21 97 2 1 154 1400 1553 Pseudacrobeles sp. JB-56 28S ribosomal RNA gene, partial sequence blastn 15567 158 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Cephalobidae Pseudacrobeles Pseudacrobeles sp. JB-56
11843242 11843242 PRJNA168635_P_NODE_33770_length_157_cov_2.111111_g33354_i0 PRJNA168635 33770 157 2.111111 3.31444427 Allodiplogaster sudhausi 2761625 Nematoda Nematoda 93.5 7.63e-15   NTclustered gi|675118796|gb|KJ877267.1| 2761625 g33354 i0 80.8 11.4203821656051 125 18 80 3 33 157 1092 974 Koerneria sudhausi strain SB413 28S ribosomal RNA gene, partial sequence blastn 1793 93.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Allodiplogaster Allodiplogaster sudhausi
12532965 12532965 PRJNA168635_P_NODE_35490_length_151_cov_4.333333_g35074_i0 PRJNA168635 35490 151 4.333333 6.54333283 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 60.2 7.36e-5   NTclustered gi|158821911|gb|EU195975.1| 96657 g35074 i0 100 1.98675496688742 32 0 21 0 35 66 1528 1497 Choriorhabditis dudichi strain SB122 28S ribosomal RNA gene, partial sequence blastn 300 60.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Choriorhabditis Choriorhabditis dudichi
14393621 14393621 PRJNA168635_P_NODE_23972_length_171_cov_4.262295_g23556_i0 PRJNA168635 23972 171 4.262295 7.28852445 Rhabditis sp. DF5059 479136 Nematoda Nematoda 145 2.3e-30   NTclustered gi|158821900|gb|EU195964.1| 479136 g23556 i0 90.826 0.637426900584795 109 9 63 1 15 122 3161 3269 Rhabditis sp. DF5059 28S ribosomal RNA gene, partial sequence blastn 109 145 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditis Rhabditis sp. DF5059
16941468 16941468 PRJNA168635_P_NODE_10314_length_257_cov_5.163462_g9899_i0 PRJNA168635 10314 257 5.163462 13.27009734 Levipalatum texanum 1486449 Nematoda Nematoda 91.6 4.95e-14   NTclustered gi|675118786|gb|KJ877257.1| 1486449 g9899 i0 80.645 35.8210116731518 124 18 47 5 128 247 2596 2475 Levipalatum texanum strain RS5280 28S ribosomal RNA gene, partial sequence blastn 9206 91.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Levipalatum Levipalatum texanum
16941901 16941901 PRJNA168635_P_NODE_3454_length_449_cov_5.325000_g3055_i0 PRJNA168635 3454 449 5.325 23.90925 Protozoophaga obesa 435737 Nematoda Nematoda 167 1.49e-36   NTclustered gi|1360814132|gb|KY857890.1| 435737 g3055 i0 93.694 24.2383073496659 111 7 25 0 172 282 672 782 Protozoophaga obesa isolate SAN-8284 28S ribosomal RNA gene, partial sequence blastn 10883 167 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Oxyuridae Protozoophaga Protozoophaga obesa
20765991 20765991 PRJNA168635_P_NODE_19937_length_182_cov_4.684211_g19521_i0 PRJNA168635 19937 182 4.684211 8.52526402 Oscheius tipulae 141969 Nematoda Nematoda 58.4 3.33e-4   NTclustered gi|158821905|gb|EU195969.1| 141969 g19521 i0 94.595 0.203296703296703 37 2 20 0 53 89 1391 1355 Oscheius tipulae strain CEW1 28S ribosomal RNA gene, partial sequence blastn 37 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Oscheius Oscheius tipulae
22040946 22040946 PRJNA168635_P_NODE_13718_length_218_cov_5.639053_g13302_i0 PRJNA168635 13718 218 5.639053 12.29313554 Filenchus sp. 3 TJP-2012 1166537 Nematoda Nematoda 82.4 2.46e-11   NTclustered gi|384482669|gb|JQ005013.1| 1166537 g13302 i0 86.667 0.344036697247706 75 8 34 2 93 166 736 663 Filenchus sp. 3 TJP-2012 isolate 32T16I09 large subunit ribosomal RNA gene, partial sequence blastn 75 82.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Tylenchidae Filenchus Filenchus sp. 3 TJP-2012
22731049 22731049 PRJNA168635_P_NODE_25818_length_168_cov_2.655462_g25402_i0 PRJNA168635 25818 168 2.655462 4.46117616 Rhabditis 6244 Nematoda Nematoda 268 1.29e-67   NTclustered gi|675118772|gb|KJ877243.1| 473155 g25402 i0 95.783 98.1607142857143 166 7 99 0 3 168 1462 1627 Rhabditis brassicae strain RS5617 28S ribosomal RNA gene, partial sequence blastn 16491 268 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditis Rhabditis brassicae
22731114 22731114 PRJNA168635_P_NODE_34098_length_156_cov_2.130841_g33682_i0 PRJNA168635 34098 156 2.130841 3.32411196 Caenorhabditis 6237 Nematoda Nematoda 78.7 2.12e-10   NTclustered gi|356605926|gb|JN636115.1| 31234 g33682 i0 95.833 7.92948717948718 48 2 31 0 13 60 3009 3056 Caenorhabditis remanei strain EM464 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1237 78.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
24590915 24590915 PRJNA168635_P_NODE_34760_length_153_cov_22.221154_g34344_i0 PRJNA168635 34760 153 22.221154 33.99836562 Ascaris lumbricoides 6252 Nematoda Nematoda 89.8 9.55e-14   NTclustered gi|347983|gb|L22247.1|NEMSNUB 6252 g34344 i0 77.987 62.4117647058824 159 24 100 10 1 153 315 468 Ascaris lumbricoides snRNA U2-1 gene, snRNA U2-2 pseudogenes, and snRNA U2-1 gene, complete sequence blastn 9549 89.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ascarididae Ascaris Ascaris lumbricoides
27831967 27831967 PRJNA168635_P_NODE_18064_length_189_cov_1.971429_g17648_i0 PRJNA168635 18064 189 1.971429 3.72600081 Heligmosomoides polygyrus 6339 Nematoda Nematoda 57 7.9e-8   NR VDP10734.1 6339 g17648 i0 58.1 5.47619047619048 43 18 68.3 0 186 58 141 183 VDP10734.1 unnamed protein product, partial [Heligmosomoides polygyrus] diamond 1035 57 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heligmosomidae Heligmosomoides Heligmosomoides polygyrus
28400354 28400354 PRJNA168635_P_NODE_15566_length_203_cov_2.610390_g15150_i0 PRJNA168635 15566 203 2.61039 5.2990917 Dirofilaria immitis 6287 Nematoda Nematoda 41.2 0.0453   NR MCP9259332.1 6287 g15150 i0 48.8 1.30049261083744 41 21 60.6 0 11 133 102 142 MCP9259332.1 hypothetical protein [Dirofilaria immitis] diamond 264 41.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Dirofilaria Dirofilaria immitis
28575985 28575985 PRJNA168635_P_NODE_19727_length_183_cov_2.291045_g19311_i0 PRJNA168635 19727 183 2.291045 4.19261235 Metazoa 33208 Nematoda Nematoda 42 0.032   NR KAL3998346.1 6277 g19311 i0 44.4 4.45901639344262 54 25 88.5 1 165 4 176 224 KAL3998346.1 Leucine Rich Repeat family protein [Acanthocheilonema viteae] diamond 816 42 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Acanthocheilonema Acanthocheilonema viteae
29049784 29049784 PRJNA168635_P_NODE_21988_length_176_cov_2.976378_g21572_i0 PRJNA168635 21988 176 2.976378 5.23842528 root 1 Root_unresolved Root_unresolved 91.3 5.97e-22   NR XP_024505722.1 34506 g21572 i0 92 304.261363636364 50 4 85.2 0 172 23 74 123 XP_024505722.1 Histone H2B family and Histone core domain and Histone-fold domain-containing protein [Strongyloides ratti] diamond 53550 92 0.992391304347826 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
29916134 29916134 PRJNA168635_P_NODE_27211_length_167_cov_0.881356_g26795_i0 PRJNA168635 27211 167 0.881356 1.47186452 Mesorhabditis belari 2138241 Nematoda Nematoda 41.2 0.0468   NR CAJ0934037.1 2138241 g26795 i0 41.2 0.916167664670659 51 26 91.6 2 167 15 94 140 CAJ0934037.1 unnamed protein product, partial [Mesorhabditis belari] diamond 153 41.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis belari
29947603 29947603 PRJNA168635_P_NODE_33211_length_158_cov_9.660550_g32795_i0 PRJNA168635 33211 158 9.66055 15.263669 Thelazia callipaeda 103827 Nematoda Nematoda 44.7 2.72e-4   NR VDN04148.1 103827 g32795 i0 42 0.949367088607595 50 29 94.9 0 7 156 14 63 VDN04148.1 unnamed protein product [Thelazia callipaeda] diamond 150 44.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Thelaziidae Thelazia Thelazia callipaeda
29965423 29965423 PRJNA168635_P_NODE_28991_length_165_cov_0.896552_g28575_i0 PRJNA168635 28991 165 0.896552 1.4793108 Metazoa 33208 Nematoda Nematoda 84.7 4.22e-19   NR NP_502794.1 6239 g28575 i0 73.1 37.7454545454545 52 14 94.5 0 157 2 96 147 NP_502794.1 Small ribosomal subunit protein uS13 [Caenorhabditis elegans] diamond 6228 85.1 0.995299647473561 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
30990334 30990334 PRJNA168635_P_NODE_28954_length_165_cov_0.896552_g28538_i0 PRJNA168635 28954 165 0.896552 1.4793108 Aphelenchoides besseyi 269767 Nematoda Nematoda 51.2 7.8e-6   NR KAI6179539.1 269767 g28538 i0 43.1 0.927272727272727 51 29 92.7 0 160 8 15 65 KAI6179539.1 Transmembrane emp24 domain-containing protein 2-like protein [Aphelenchoides besseyi] diamond 153 51.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides besseyi
31242880 31242880 PRJNA168635_P_NODE_12395_length_231_cov_3.357143_g11979_i0 PRJNA168635 12395 231 3.357143 7.75500033 Dirofilaria immitis 6287 Nematoda Nematoda 54.3 1.09e-6   NR MCP9259222.1 6287 g11979 i0 47.2 0.688311688311688 53 28 68.8 0 223 65 94 146 MCP9259222.1 putative serine acetyltransferase [Dirofilaria immitis] diamond 159 54.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Dirofilaria Dirofilaria immitis
31861627 31861627 PRJNA168635_P_NODE_25017_length_169_cov_1.725000_g24601_i0 PRJNA168635 25017 169 1.725 2.91525 Trichinella 6333 Nematoda Nematoda 68.9 7.66e-12   NR KAL1233081.1 6337 g24601 i0 60 3.90532544378698 55 22 97.6 0 167 3 785 839 KAL1233081.1 Acetyl-CoA carboxylase [Trichinella pseudospiralis] diamond 660 68.9 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella pseudospiralis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;