RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA168635", tax_phylum = "Deferribacterota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Deferribacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA168635 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2329549 2329549 PRJNA168635_P_NODE_25142_length_169_cov_1.450000_g24726_i0 PRJNA168635 25142 169 1.45 2.4505 Mucispirillum 248038 Bacteria Bacteria 241 2.81e-59   NTclustered gi|2211256631|emb|OW091398.1| 248039 g24726 i0 92.308 171.573964497041 169 13 100 0 1 169 867764 867932 Mucispirillum schaedleri isolate Mucispirillum_schaedleri_DSM104751 genome assembly, chromosome: Mucispirillum_schaedleri_1 blastn 28996 241 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Mucispirillaceae Mucispirillum Mucispirillum schaedleri
12532814 12532814 PRJNA168635_P_NODE_16270_length_198_cov_3.758389_g15854_i0 PRJNA168635 16270 198 3.758389 7.44161022 Denitrovibrio 117999 Bacteria Bacteria 150 5.919999999999999e-32   NTclustered gi|470486080|ref|NR_076734.1| 118000 g15854 i0 81.122 62.8232323232323 196 29 97 7 2 194 30 220 Denitrovibrio acetiphilus strain N2460 23S ribosomal RNA gene, complete sequence blastn 12439 150 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Geovibrionaceae Denitrovibrio Denitrovibrio acetiphilus
16356615 16356615 PRJNA168635_P_NODE_18373_length_188_cov_1.489209_g17957_i0 PRJNA168635 18373 188 1.489209 2.79971292 Flexistipes 2351 Bacteria Bacteria 80.5 7.39e-11   NTclustered gi|470488959|ref|NR_076897.1| 2352 g17957 i0 87.143 1.11702127659574 70 9 37 0 118 187 2009 2078 Flexistipes sinusarabici strain MAS 10 23S ribosomal RNA gene, complete sequence blastn 210 80.5 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Flexistipitaceae Flexistipes Flexistipes sinusarabici
20180297 20180297 PRJNA168635_P_NODE_22396_length_175_cov_2.293651_g21980_i0 PRJNA168635 22396 175 2.293651 4.01388925 Deferribacter 53572 Bacteria Bacteria 89.8 1.12e-13   NTclustered gi|470475553|ref|NR_076287.1| 197162 g21980 i0 85.227 6.57714285714286 88 11 49 2 86 171 1490 1403 Deferribacter desulfuricans strain SSM1 23S ribosomal RNA gene, complete sequence blastn 1151 89.8 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Deferribacteraceae Deferribacter Deferribacter desulfuricans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;