RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA168635" and tax_phylum = "Candidatus Niyogiibacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Niyogiibacteriota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA168635 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11843197 11843197 PRJNA168635_P_NODE_29530_length_164_cov_2.226087_g29114_i0 PRJNA168635 29530 164 2.226087 3.65078268 Candidatus Niyogibacteria bacterium 2750078 Bacteria Bacteria 121 3.7e-23   NTclustered gi|1950817574|gb|CP066691.1| 2750078 g29114 i0 81.169 1.81707317073171 154 25 93 4 3 154 396412 396563 MAG: Candidatus Niyogibacteria bacterium isolate NC_groundwater_707_Ag_S-0.2um_45_26 chromosome blastn 298 121 1 Bacteria Bacteria candidate phyla   Candidatus Niyogiibacteriota         Candidatus Niyogibacteria bacterium
30737278 30737278 PRJNA168635_P_NODE_15094_length_207_cov_1.189873_g14678_i0 PRJNA168635 15094 207 1.189873 2.46303711 Candidatus Niyogibacteria bacterium RIFCSPLOWO2_ 2750078 Bacteria Bacteria 40.8 0.0208   NR OGZ31266.1 1801725 g14678 i0 38.2 0.797101449275362 55 33 79.7 1 14 178 24 77 OGZ31266.1 MAG: hypothetical protein A3J00_01855 [Candidatus Niyogibacteria bacterium RIFCSPLOWO2_02_FULL_45_13] diamond 165 40.8 1 Bacteria Bacteria candidate phyla   Candidatus Niyogiibacteriota         Candidatus Niyogibacteria bacterium RIFCSPLOWO2_02_FULL_45_13

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;