RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA168635" and tax_phylum = "Acanthocephala"

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tax_superkingdom 1

tax_phylum 1

  • Acanthocephala · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA168635 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7432140 7432140 PRJNA168635_P_NODE_19406_length_184_cov_2.340741_g18990_i0 PRJNA168635 19406 184 2.340741 4.30696344 Metazoa 33208 Acanthocephala other_Eukaryota 87.9 4.3e-13   NTclustered gi|61200851|gb|AY829100.1| 317563 g18990 i0 98 25.7554347826087 50 1 27 0 1 50 1719 1768 Acanthocephaloides propinquus 28S ribosomal RNA gene, partial sequence blastn 4739 87.9 1 Eukaryota Opisthokonta Metazoa Acanthocephala Palaeacanthocephala Echinorhynchida Arhythmacanthidae Acanthocephaloides Acanthocephaloides propinquus
24006138 24006138 PRJNA168635_P_NODE_1619_length_628_cov_6.692573_g1268_i0 PRJNA168635 1619 628 6.692573 42.02935844 Acanthocephala 10232 Acanthocephala other_Eukaryota 110 3.65e-19   NTclustered gi|21304228|gb|AY062433.1| 181514 g1268 i0 88.043 10.0175159235669 92 11 15 0 113 204 407 316 Rhadinorhynchus sp. GL-2001 18S ribosomal RNA gene, complete sequence blastn 6291 110 1 Eukaryota Opisthokonta Metazoa Acanthocephala Palaeacanthocephala Echinorhynchida Rhadinorhynchidae Rhadinorhynchus Rhadinorhynchus sp. GL-2001

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;