RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA168635", tax_kingdom = "Methanobacteriati" and tax_phylum = "Thermoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermoplasmatota · 4 ✖

tax_kingdom 1

  • Methanobacteriati · 4 ✖

bioproject 1

  • PRJNA168635 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8017954 8017954 PRJNA168635_P_NODE_32147_length_162_cov_0.920354_g31731_i0 PRJNA168635 32147 162 0.920354 1.49097348 Methanomassiliicoccaceae archaeon DOK 1535962 Archaea Archaea 300 4.36e-77   NTclustered gi|1799215713|gb|CP047880.1| 1535962 g31731 i0 100 12.8456790123457 162 0 100 0 1 162 1503352 1503191 Methanomassiliicoccaceae archaeon DOK chromosome, complete genome blastn 2081 300 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomassiliicoccaceae   Methanomassiliicoccaceae archaeon DOK
16941669 16941669 PRJNA168635_P_NODE_20034_length_182_cov_1.924812_g19618_i0 PRJNA168635 20034 182 1.924812 3.50315784 Methanomassiliicoccaceae archaeon DOK 1535962 Archaea Archaea 337 3.82e-88   NTclustered gi|1799215713|gb|CP047880.1| 1535962 g19618 i0 100 69.3021978021978 182 0 100 0 1 182 1504448 1504267 Methanomassiliicoccaceae archaeon DOK chromosome, complete genome blastn 12613 337 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomassiliicoccaceae   Methanomassiliicoccaceae archaeon DOK
30168509 30168509 PRJNA168635_P_NODE_25352_length_169_cov_0.866667_g24936_i0 PRJNA168635 25352 169 0.866667 1.46466723 Methanomethylophilus sp. 2774294 Archaea Archaea 82.8 9.6e-17   NR MDD2626721.1 2774294 g24936 i0 70.4 0.958579881656805 54 16 95.9 0 2 163 117 170 MDD2626721.1 DNA polymerase [Methanomethylophilus sp.] diamond 162 82.8 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomethylophilaceae Methanomethylophilus Methanomethylophilus sp.
31147747 31147747 PRJNA168635_P_NODE_31755_length_162_cov_1.575221_g31339_i0 PRJNA168635 31755 162 1.575221 2.55185802 Methanomassiliicoccales archaeon 1906667 Archaea Archaea 48.5 1.01e-4   NR HUT27441.1 1906667 g31339 i0 43.2 0.814814814814815 44 25 81.5 0 151 20 56 99 HUT27441.1 hypothetical protein [Methanomassiliicoccales archaeon] diamond 132 48.5 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales     Methanomassiliicoccales archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;