RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA1264536" and tax_phylum = "Fusobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Fusobacteriota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1264536 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
363888 363888 PRJNA1264536_P_NODE_4341_length_253_cov_0.866667_g4267_i0 PRJNA1264536 4341 253 0.866667 2.19266751 Fusobacterium mortiferum 850 Bacteria Bacteria 115 2.89e-21   NTclustered gi|1370540179|gb|CP028102.1| 469616 g4267 i0 77.835 1.38339920948617 194 38 76 5 60 252 822299 822488 Fusobacterium mortiferum ATCC 9817 chromosome, complete genome blastn 350 115 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium mortiferum
5467229 5467229 PRJNA1264536_P_NODE_2905_length_329_cov_1.410156_g2831_i0 PRJNA1264536 2905 329 1.410156 4.63941324 Cetobacterium somerae 188913 Bacteria Bacteria 372 2.09e-98   NTclustered gi|2865366169|gb|CP122292.1| 188913 g2831 i0 87.156 4.96352583586626 327 42 99 0 1 327 1713912 1713586 Cetobacterium somerae strain MSU41 chromosome, complete genome blastn 1633 372 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
16941181 16941181 PRJNA1264536_P_NODE_4834_length_248_cov_0.960000_g4760_i0 PRJNA1264536 4834 248 0.96 2.3808 Cetobacterium somerae 188913 Bacteria Bacteria 453 5.2600000000000005e-123   NTclustered gi|2201062197|gb|CP092519.1| 188913 g4760 i0 99.597 5 248 1 100 0 1 248 1722964 1723211 Cetobacterium somerae strain CS2105-BJ chromosome, complete genome blastn 1240 453 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
29694544 29694544 PRJNA1264536_P_NODE_4770_length_249_cov_0.886364_g4696_i0 PRJNA1264536 4770 249 0.886364 2.20704636 uncultured Cetobacterium sp. 527638 Bacteria Bacteria 165 6.62e-50   NR WP_294094715.1 527638 g4696 i0 100 1 83 0 100 0 249 1 108 190 WP_294094715.1 hypothetical protein [uncultured Cetobacterium sp.] diamond 249 165 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium uncultured Cetobacterium sp.
30990318 30990318 PRJNA1264536_P_NODE_4714_length_250_cov_0.881356_g4640_i0 PRJNA1264536 4714 250 0.881356 2.20339 uncultured Cetobacterium sp. 527638 Bacteria Bacteria 176 7.73e-53   NR WP_294093108.1 527638 g4640 i0 100 0.996 83 0 99.6 0 1 249 223 305 WP_294093108.1 L,D-transpeptidase [uncultured Cetobacterium sp.] diamond 249 176 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium uncultured Cetobacterium sp.
31970434 31970434 PRJNA1264536_P_NODE_5258_length_244_cov_0.912281_g5184_i0 PRJNA1264536 5258 244 0.912281 2.22596564 unclassified Cetobacterium 2630983 Bacteria Bacteria 167 1.97e-49   NR WP_047384192.1 2630983 g5184 i0 100 0.995901639344262 81 0 99.6 0 1 243 164 244 WP_047384192.1 MULTISPECIES: VacJ family lipoprotein [unclassified Cetobacterium] diamond 243 167 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium  

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;