RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA1264536", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Bacteria · 6 ✖

tax_phylum 1

  • Acidobacteriota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1264536 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2329327 2329327 PRJNA1264536_P_NODE_5322_length_244_cov_0.912281_g5248_i0 PRJNA1264536 5322 244 0.912281 2.22596564 Candidatus Acidiferrales bacterium 2952895 Bacteria Bacteria 134 2.38e-34   NR HKQ88412.1 2952895 g5248 i0 77.8 10.9549180327869 81 18 99.6 0 2 244 475 555 HKQ88412.1 efflux RND transporter permease subunit [Candidatus Acidiferrales bacterium] diamond 2673 134 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales     Candidatus Acidiferrales bacterium
26630762 26630762 PRJNA1264536_P_NODE_5081_length_246_cov_0.901734_g5007_i0 PRJNA1264536 5081 246 0.901734 2.21826564 Terriglobales bacterium 2282142 Bacteria Bacteria 70.1 1.96e-12   NR HUE52513.1 2282142 g5007 i0 73.8 0.51219512195122 42 11 51.2 0 245 120 172 213 HUE52513.1 hypothetical protein [Terriglobales bacterium] diamond 126 70.1 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales     Terriglobales bacterium
28495216 28495216 PRJNA1264536_P_NODE_4607_length_251_cov_0.876404_g4533_i0 PRJNA1264536 4607 251 0.876404 2.19977404 Terriglobales bacterium 2282142 Bacteria Bacteria 123 8.169999999999998e-31   NR HUK87135.1 2282142 g4533 i0 78.6 1.00398406374502 84 16 99.2 2 3 251 129 211 HUK87135.1 AsmA family protein [Terriglobales bacterium] diamond 252 123 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales     Terriglobales bacterium
29820940 29820940 PRJNA1264536_P_NODE_5431_length_243_cov_0.917647_g5357_i0 PRJNA1264536 5431 243 0.917647 2.22988221 Terriglobales bacterium 2282142 Bacteria Bacteria 106 1.66e-25   NR HZT74101.1 2282142 g5357 i0 75.7 0.91358024691358 74 18 91.4 0 223 2 178 251 HZT74101.1 ABC transporter permease [Terriglobales bacterium] diamond 222 106 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales     Terriglobales bacterium
31559457 31559457 PRJNA1264536_P_NODE_4436_length_252_cov_0.871508_g4362_i0 PRJNA1264536 4436 252 0.871508 2.19620016 Candidatus Acidiferrum sp. 3069120 Bacteria Bacteria 46.2 0.00208   NR HVM46498.1 3069120 g4362 i0 63.6 0.392857142857143 33 11 39.3 1 153 251 1 32 HVM46498.1 hypothetical protein [Candidatus Acidiferrum sp.] diamond 99 46.2 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales   Candidatus Acidiferrum Candidatus Acidiferrum sp.
32318852 32318852 PRJNA1264536_P_NODE_4899_length_248_cov_0.891429_g4825_i0 PRJNA1264536 4899 248 0.891429 2.21074392 Candidatus Sulfopaludibacter sp. 2963552 Bacteria Bacteria 96.3 5.77e-21   NR HWC97358.1 2963552 g4825 i0 68.5 0.883064516129032 73 20 87.1 2 219 4 1 71 HWC97358.1 alpha/beta hydrolase-fold protein [Candidatus Sulfopaludibacter sp.] diamond 219 96.3 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Solibacteraceae Candidatus Sulfopaludibacter Candidatus Sulfopaludibacter sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;