RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1264536", tax_clade = "Sar" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1264536 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30042287 30042287 PRJNA1264536_P_NODE_5371_length_243_cov_0.917647_g5297_i0 PRJNA1264536 5371 243 0.917647 2.22988221 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 119 1.92e-29   NR KAH9123835.1 100861 g5297 i0 77.5 1.95061728395062 80 18 98.8 0 1 240 330 409 KAH9123835.1 hypothetical protein AeMF1_005294 [Aphanomyces euteiches] diamond 474 119 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
30249937 30249937 PRJNA1264536_P_NODE_5212_length_245_cov_0.906977_g5138_i0 PRJNA1264536 5212 245 0.906977 2.22209365 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 132 3.23e-34   NR POM60402.1 4796 g5138 i0 70.4 764.4 81 24 99.2 0 244 2 162 242 POM60402.1 Actin-1 [Phytophthora palmivora] diamond 187278 133 0.992481203007519 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora palmivora
30832152 30832152 PRJNA1264536_P_NODE_2594_length_349_cov_0.836957_g2520_i0 PRJNA1264536 2594 349 0.836957 2.92097993 Pythium oligandrum 41045 SAR_Eukaryotes SAR_Eukaryotes 93.6 2.67e-21   NR TMW67896.1 41045 g2520 i0 52.1 1.53868194842407 96 43 81.7 2 287 3 1 94 TMW67896.1 hypothetical protein Poli38472_007568 [Pythium oligandrum] diamond 537 93.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;