RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1264536", tax_clade = "Opisthokonta" and tax_phylum = "Platyhelminthes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA1264536 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4191013 4191013 PRJNA1264536_P_NODE_384_length_928_cov_9.100585_g327_i0 PRJNA1264536 384 928 9.100585 84.4534288 Stenostomum sthenum 1611831 Platyhelminthes Platyhelminthes 1445 0   NTclustered gi|1215837197|ref|NC_035256.1| 1611831 g327 i0 94.828 23.2467672413793 928 44 99 3 1 926 8965 8040 Stenostomum sthenum mitochondrion, complete genome blastn 21573 1445 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum sthenum
18215596 18215596 PRJNA1264536_P_NODE_1595_length_455_cov_1.091623_g1521_i0 PRJNA1264536 1595 455 1.091623 4.96688465 Stenostomum cf. simplex AW-2018 2495572 Platyhelminthes Platyhelminthes 791 0   NTclustered gi|1532673575|gb|MH663467.1| 2495572 g1521 i0 98.234 0.995604395604396 453 7 99 1 1 453 3 454 Stenostomum cf. simplex AW-2018 16S ribosomal RNA gene, partial sequence; mitochondrial blastn 453 791 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum cf. simplex AW-2018
26820904 26820904 PRJNA1264536_P_NODE_2121_length_390_cov_0.984227_g2047_i0 PRJNA1264536 2121 390 0.984227 3.8384853 Stenostomum leucops 52061 Platyhelminthes Platyhelminthes 75.1 2.46e-13   NR AQN67664.1 52061 g2047 i0 92.5 0.307692307692308 40 3 30.8 0 353 234 52 91 AQN67664.1 cytochrome oxidase subunit 3 [Stenostomum leucops] diamond 120 75.1 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum leucops

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;