RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1264536" and tax_clade = "Amoebozoa"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA1264536 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2914577 2914577 PRJNA1264536_P_NODE_2123_length_390_cov_0.728707_g2049_i0 PRJNA1264536 2123 390 0.728707 2.8419573 Vannella sp. GERL34 1002218 Discosea other_Eukaryota 627 4.869999999999999e-175   NTclustered gi|327391633|gb|HM363631.1| 1002218 g2049 i0 95.674 101.146153846154 393 12 100 5 1 390 1553 1163 Vannella sp. GERL34 small subunit ribosomal RNA gene, partial sequence blastn 39447 627 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. GERL34
27010491 27010491 PRJNA1264536_P_NODE_5122_length_246_cov_0.901734_g5048_i0 PRJNA1264536 5122 246 0.901734 2.21826564 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 55.1 1.71e-6   NR PRP79601.1 1890364 g5048 i0 42.9 0.682926829268293 56 29 64.6 1 160 2 278 333 PRP79601.1 hypothetical protein PROFUN_14535 [Planoprotostelium fungivorum] diamond 168 55.1 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
31622448 31622448 PRJNA1264536_P_NODE_2856_length_331_cov_1.813953_g2782_i0 PRJNA1264536 2856 331 1.813953 6.00418443 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 86.3 3.65e-17   NR PRP80070.1 1890364 g2782 i0 64.8 0.489425981873112 54 19 48.9 0 168 329 250 303 PRP80070.1 glutathione S-transferase domain-containing protein [Planoprotostelium fungivorum] diamond 162 86.3 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;