RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1263632", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Myxococcota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1263632 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18215546 18215546 PRJNA1263632_P_NODE_8135_length_242_cov_0.911243_g8117_i0 PRJNA1263632 8135 242 0.911243 2.20520806 Archangium violaceum 83451 Bacteria Bacteria 291 4.24e-74   NTclustered gi|1985695619|gb|CP069396.1| 83451 g8117 i0 90.826 1.85537190082645 218 18 90 2 1 217 4494347 4494131 Archangium violaceum strain SDU8 chromosome, complete genome blastn 449 291 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium violaceum
23315956 23315956 PRJNA1263632_P_NODE_7799_length_244_cov_0.900585_g7781_i0 PRJNA1263632 7799 244 0.900585 2.1974274 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 125 2.49e-31   NR MCP4669139.1 2026735 g7781 i0 74.1 0.995901639344262 81 21 99.6 0 1 243 72 152 MCP4669139.1 adenylyl-sulfate kinase [Deltaproteobacteria bacterium] diamond 243 125 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32571863 32571863 PRJNA1263632_P_NODE_7599_length_245_cov_0.895349_g7581_i0 PRJNA1263632 7599 245 0.895349 2.19360505 Polyangiaceae bacterium 2268199 Bacteria Bacteria 87 3.27e-18   NR HTQ45136.1 2268199 g7581 i0 54.5 0.942857142857143 77 34 94.3 1 231 1 27 102 HTQ45136.1 PHB depolymerase family esterase [Polyangiaceae bacterium] diamond 231 87 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
32791844 32791844 PRJNA1263632_P_NODE_7040_length_248_cov_0.880000_g7022_i0 PRJNA1263632 7040 248 0.88 2.1824 Myxococcales bacterium 2026763 Bacteria Bacteria 53.1 4.95e-6   NR NNL65067.1 2026763 g7022 i0 41.8 0.810483870967742 67 34 75 1 209 24 3 69 NNL65067.1 DJ-1/PfpI family protein [Myxococcales bacterium] diamond 201 53.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;